RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	PLCZ1	Q86YW0	608 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	SELENOH	Q8IZQ5	122 aa	Known RBP	0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	BLID	Q8IZY5	108 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	CCDC112	Q8NEF3	446 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	LFNG	Q8NES3	379 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	OR2D3	Q8NGH3	330 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	OR5L1	Q8NGL2	311 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	RNASE11	Q8TAA1	199 aa	Known RBP	0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	TLCD1	Q96CP7	247 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	TRNT1	Q96Q11	434 aa	Known RBP	0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	RBP7	Q96R05	134 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	TBX5	Q99593	518 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488		Q9BRP9	147 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	TMEM208	Q9BTX3	173 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	NKX6-2	Q9C056	277 aa	Predicted RBP	0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	SPANXB1	Q9NS25	103 aa	Predicted RBP	0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	NDUFB11	Q9NX14	153 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	FAM206A	Q9NX38	181 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	SNX12	Q9UMY4	172 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	MINOS1-NBL1	R4GNA1	71 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	CR1	P17927	2039 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	RTL1	A6NKG5	1358 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	ROCK1	Q13464	1354 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	ASCC3	Q8N3C0	2202 aa	Known RBP	0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	MCM3AP	O60318	1980 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	CHD5	Q8TDI0	1954 aa		0.92	□□□□□ -2.26
PRKDC-210	ENST00000541488	CHD3	Q12873	2000 aa	Known RBP	0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	ABCA13	Q86UQ4	5058 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	TACC2	O95359	2948 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	C19orf71	A6NCJ1	209 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	FTCDNL1	E5RQL4	147 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	FNDC10	F2Z333	226 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488		H3BRN7	92 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	CCRL2	O00421	344 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	SLC17A3	O00476	420 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	STX10	O60499	249 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	SOD1	P00441	154 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	NPPA	P01160	153 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	LINC00614	P0C842	121 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	OCM	P0CE72	109 aa	Predicted RBP	0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	OR13C7	P0DN81	318 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	GZMB	P10144	247 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	PRB4	P10163	310 aa	Predicted RBP	0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	CRHBP	P24387	322 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	HSPA9	P38646	679 aa	Known RBP	0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	SNAP25	P60880	206 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	BTN3A2	P78410	334 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	EBP	Q15125	230 aa	Known RBP	0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	XKRX	Q6PP77	449 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	DEFB128	Q7Z7B8	93 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	OR4X1	Q8NH49	305 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	MS4A6E	Q96DS6	147 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	MRPS24	Q96EL2	167 aa	Known RBP	0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	ATP6V1G3	Q96LB4	118 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	SMR3A	Q99954	134 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	ZNF426	Q9BUY5	554 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	ZNF471	Q9BX82	626 aa	Predicted RBP	0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	OR51B6	Q9H340	312 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	PARVA	Q9NVD7	372 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	GMEB1	Q9Y692	573 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	MDC1	Q14676	2089 aa	Known RBP	0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488		A0A1W2PP64	1363 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	KIAA1549L	Q6ZVL6	1849 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	DSCAM	O60469	2012 aa		0.91	□□□□□ -2.26
PRKDC-210	ENST00000541488	MYOM3	Q5VTT5	1437 aa		0.9	□□□□□ -2.26
PRKDC-210	ENST00000541488	TRAV8-1	A0A0A6YYK1	113 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	IGHV3-15	A0A0B4J1V0	119 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	TEX50	A0A1B0GTY4	177 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	METTL15	A6NJ78	407 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	C2orf74	A8MZ97	194 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	ZW10	O43264	779 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	GSTZ1	O43708	216 aa	Predicted RBP	0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	NDUFB2	O95178	105 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	ASS1	P00966	412 aa	Known RBP	0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	PET100	P0DJ07	73 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	MIP	P30301	263 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	ADORA1	P30542	326 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	CD79B	P40259	229 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	CA7	P43166	264 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	LINC00313	P59037	77 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	PRDX4	Q13162	271 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	SRSF6	Q13247	344 aa	Known RBP	0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	SDHAF4	Q5VUM1	108 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	ZNF283	Q8N7M2	679 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	OR7G1	Q8NGA0	311 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	LHFPL5	Q8TAF8	219 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	DCANP1	Q8TF63	244 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	CYGB	Q8WWM9	190 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	CPNE2	Q96FN4	548 aa	Predicted RBP	0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	GPR22	Q99680	433 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	NDEL1	Q9GZM8	345 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	C16orf95	Q9H693	158 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	SPACA1	Q9HBV2	294 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	TP53TG1	Q9Y2A0	90 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	FAM215A	Q9Y5M1	114 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	FRAS1	Q86XX4	4008 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	OBSL1	O75147	1896 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	PCDH15	Q96QU1	1955 aa		0.9	□□□□□ -2.27
PRKDC-210	ENST00000541488	TRRAP	Q9Y4A5	3859 aa		0.89	□□□□□ -2.27

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms