RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 A8MWP6 167 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 INS-IGF2F8WCM5 200 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 K7EIM0 57 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 CLEC3BP05452 202 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 NHLRC4P0CG21 123 aaPredicted RBP10.75□□□□□ -0.69
USP28-209ENST00000540925 EDN2P20800 178 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 HSPE1P61604 102 aaKnown RBP10.75□□□□□ -0.69
USP28-209ENST00000540925 IZUMO4Q1ZYL8 232 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 AARDQ4LEZ3 155 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 OR2C3Q8N628 320 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 CCDC71LQ8N9Z2 235 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 OR51S1Q8NGJ8 323 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 OR1P1Q8NH06 330 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 TRIM63Q969Q1 353 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 ZNF414Q96IQ9 312 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 TMEM56Q96MV1 263 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 ATP6V0BQ99437 205 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 PRRT1Q99946 306 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 THYN1Q9P016 225 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 COPZ2Q9P299 210 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 TENM3Q9P273 2699 aa10.75□□□□□ -0.69
USP28-209ENST00000540925 A0A0G2JRQ6 117 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 TMEM213A2RRL7 107 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 IZUMO1RA6ND01 250 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 A8MZ25 164 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 DISC1C4P0D8 188 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 CDS2O95674 445 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 ZNF79Q15937 498 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 SP6Q3SY56 376 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 CCDC190Q86UF4 302 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 Q8N402 240 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 OR2K2Q8NGT1 345 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 OR4A16Q8NH70 328 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 LHFPL5Q8TAF8 219 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 GLYATL2Q8WU03 294 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 HINT2Q9BX68 163 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 ZNF436Q9C0F3 470 aaPredicted RBP10.74□□□□□ -0.69
USP28-209ENST00000540925 TMEM222Q9H0R3 208 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 ZC4H2Q9NQZ6 224 aa10.74□□□□□ -0.69
USP28-209ENST00000540925 CRYM-AS1A6NIL9 109 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 CYB5BO43169 146 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 FOLR2P14207 255 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 GPR183P32249 361 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 KLF9Q13886 244 aaPredicted RBP10.73□□□□□ -0.69
USP28-209ENST00000540925 DEFB114Q30KQ6 69 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 PVRIGQ6DKI7 326 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 SLC25A24Q6NUK1 477 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 OR1L6Q8NGR2 347 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 SCARB1Q8WTV0 552 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 TMEM230Q96A57 120 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 NAA60Q9H7X0 242 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 C19orf73Q9NVV2 129 aa10.73□□□□□ -0.69
USP28-209ENST00000540925 TEX13DA0A0J9YY54 714 aaPredicted RBP10.72□□□□□ -0.69
USP28-209ENST00000540925 I3L2K1 104 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 TGOLN2O43493 480 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 OR5AC1P0C628 307 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 FRMD6-AS1P0C7T7 363 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 C8orf88P0DMB2 117 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 CBLN1P23435 193 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 FCGR2BP31994 310 aaPredicted RBP10.72□□□□□ -0.69
USP28-209ENST00000540925 ETV6P41212 452 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 CD300EQ496F6 205 aaPredicted RBP10.72□□□□□ -0.69
USP28-209ENST00000540925 FAM106AQ4KMX7 169 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 LCN12Q6JVE5 192 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 UNQ9165/PRO28630Q6UXU0 137 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 Q6ZRM9 215 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 GALNT14Q96FL9 552 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 BSCL2Q96G97 398 aaPredicted RBP10.72□□□□□ -0.69
USP28-209ENST00000540925 C14orf166Q9Y224 244 aaKnown RBP10.72□□□□□ -0.69
USP28-209ENST00000540925 TMEM56-RWDD3S4R434 201 aa10.72□□□□□ -0.69
USP28-209ENST00000540925 CCDC160A6NGH7 325 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 ZNF785A8K8V0 405 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 ST8SIA3O43173 380 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 ATG12O94817 140 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 ADMP35318 185 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 AKR1C2P52895 323 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 TRIM16LQ309B1 348 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 SPSB3Q6PJ21 355 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 SBSPONQ8IVN8 264 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 SELENOHQ8IZQ5 122 aaKnown RBP10.71□□□□□ -0.69
USP28-209ENST00000540925 CHRDL1Q9BU40 450 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 C21orf62Q9NYP8 219 aa10.71□□□□□ -0.69
USP28-209ENST00000540925 TECRQ9NZ01 308 aaKnown RBP10.71□□□□□ -0.69
USP28-209ENST00000540925 OR2T8A6NH00 312 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 CTSGP08311 255 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 IGHV4-30-4P0DP06 118 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 ELLP55199 621 aaPredicted RBP10.7□□□□□ -0.7
USP28-209ENST00000540925 SUPT4H1P63272 117 aaKnown RBP10.7□□□□□ -0.7
USP28-209ENST00000540925 DHODHQ02127 395 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 BSXQ3C1V8 233 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 PLET1Q6UQ28 207 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 FAM219AQ8IW50 185 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 CACNG8Q8WXS5 425 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 TMEM190Q8WZ59 177 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 RBPMSQ93062 196 aaKnown RBP10.7□□□□□ -0.7
USP28-209ENST00000540925 PLEKHA3Q9HB20 300 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 MLXQ9UH92 298 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 SCP2D1Q9UJQ7 156 aa10.7□□□□□ -0.7
USP28-209ENST00000540925 IGHV3-21A0A0B4J1V1 117 aa10.69□□□□□ -0.7
USP28-209ENST00000540925 TMEM187Q14656 261 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms