RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 SMUG1Q53HV7 270 aa11.81□□□□□ -0.52
COLCA1-204ENST00000540738 ZNF660Q6AZW8 331 aaPredicted RBP11.81□□□□□ -0.52
COLCA1-204ENST00000540738 LAIR2Q6ISS4 152 aa11.81□□□□□ -0.52
COLCA1-204ENST00000540738 IGFL2Q6UWQ7 119 aa11.81□□□□□ -0.52
COLCA1-204ENST00000540738 ZNF705AQ6ZN79 300 aaPredicted RBP11.81□□□□□ -0.52
COLCA1-204ENST00000540738 ANGPTL6Q8NI99 470 aa11.81□□□□□ -0.52
COLCA1-204ENST00000540738 OR10C1Q96KK4 312 aa11.81□□□□□ -0.52
COLCA1-204ENST00000540738 AREGP15514 252 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 PRTN3P24158 256 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 EFNB3Q15768 340 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 SRSF7Q16629 238 aaKnown RBP eCLIP11.8□□□□□ -0.52
COLCA1-204ENST00000540738 C19orf54Q5BKX5 351 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 S4R3C0 116 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 AQP10Q96PS8 301 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 CSN3P07498 182 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 TEX38Q6PEX7 206 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 PTPRDP23468 1912 aa11.8□□□□□ -0.52
COLCA1-204ENST00000540738 CD33P20138 364 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 Q1RN00 199 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 GAFA1Q96PS6 74 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 FAM215AQ9Y5M1 114 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 C15orf61A6NNL5 157 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 AMY1AP04745 511 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 POLEQ07864 2286 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 WDR81Q562E7 1941 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 TRAV14DV4A0A0A6YYC5 116 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 FAM90A9PA6NNJ1 464 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 PDZD11Q5EBL8 140 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 MRPL54Q6P161 138 aaKnown RBP11.79□□□□□ -0.52
COLCA1-204ENST00000540738 RAB24Q969Q5 203 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 MYOZ3Q8TDC0 251 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 IGHV1-3A0A0C4DH29 117 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 FABP4P15090 132 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 KLRD1Q13241 179 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 TMEM167AQ8TBQ9 72 aa11.79□□□□□ -0.52
COLCA1-204ENST00000540738 PSMG3Q9BT73 122 aaPredicted RBP11.79□□□□□ -0.52
COLCA1-204ENST00000540738 A0A087WV48 116 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 GGCTO75223 188 aaKnown RBP11.78□□□□□ -0.52
COLCA1-204ENST00000540738 SAP30O75446 220 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 UQCRFS1P47985 274 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 PTTG1IPP53801 180 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 DUX3Q96PT4 197 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 KLHDC3Q9BQ90 382 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 BET1LQ9NYM9 111 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 FBLL1A6NHQ2 334 aaKnown RBP11.78□□□□□ -0.52
COLCA1-204ENST00000540738 DUTP33316 252 aaKnown RBP11.78□□□□□ -0.52
COLCA1-204ENST00000540738 SULT1A2P50226 295 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 MEF2BQ02080 365 aaPredicted RBP11.78□□□□□ -0.52
COLCA1-204ENST00000540738 CR1LQ2VPA4 569 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 SLC50A1Q9BRV3 221 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 PROK2Q9HC23 129 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 TFF1P04155 84 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 CD177Q8N6Q3 437 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 FOXI3A8MTJ6 420 aaPredicted RBP11.78□□□□□ -0.52
COLCA1-204ENST00000540738 SELLP14151 372 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 PLAURQ03405 335 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 TMEM219Q86XT9 240 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 DMRTA2Q96SC8 542 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 CDC42EP3Q9UKI2 254 aa11.78□□□□□ -0.52
COLCA1-204ENST00000540738 H7C1H1 209 aa11.77□□□□□ -0.52
COLCA1-204ENST00000540738 LY6HO94772 140 aa11.77□□□□□ -0.52
COLCA1-204ENST00000540738 IL6RP08887 468 aaPredicted RBP11.77□□□□□ -0.52
COLCA1-204ENST00000540738 PNRC2Q9NPJ4 139 aaKnown RBP11.77□□□□□ -0.52
COLCA1-204ENST00000540738 IGHV3-66A0A0C4DH42 116 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 PAX8Q06710 450 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 FUT9Q9Y231 359 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 NOTCH4Q99466 2003 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 TMEM97Q5BJF2 176 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 LEMD1Q68G75 181 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 HIST1H2BAQ96A08 127 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 LINC01587Q99440 93 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 MED12Q93074 2177 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 ZNF253O75346 499 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 NBEAP1P0C6P0 100 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 ARL14EPLP0DKL9 152 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 IBA57Q5T440 356 aaKnown RBP11.77□□□□□ -0.53
COLCA1-204ENST00000540738 TMEM42Q69YG0 159 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 TMEM88Q6PEY1 159 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 GOLT1AQ6ZVE7 132 aa11.77□□□□□ -0.53
COLCA1-204ENST00000540738 RNF166Q96A37 237 aaPredicted RBP11.77□□□□□ -0.53
COLCA1-204ENST00000540738 CD99P14209 185 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 PAX1P15863 534 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 EGR1P18146 543 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 OTX1P32242 354 aaPredicted RBP11.76□□□□□ -0.53
COLCA1-204ENST00000540738 ANAPC1Q9H1A4 1944 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 WT1P19544 449 aaPredicted RBP11.76□□□□□ -0.53
COLCA1-204ENST00000540738 NDUFB4O95168 129 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 HLA-DRB1P01911 266 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 UBE2E1P51965 193 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 ICAM4Q14773 271 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 SLC25A48Q6ZT89 311 aaKnown RBP11.76□□□□□ -0.53
COLCA1-204ENST00000540738 KIF26BQ2KJY2 2108 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 IGKV1-12A0A0C4DH73 117 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 J3QRE1 110 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 IGKV1D-12P01611 117 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 PRCDQ00LT1 54 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 DMRTC2Q8IXT2 367 aaPredicted RBP11.76□□□□□ -0.53
COLCA1-204ENST00000540738 Q8TCH9 128 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 USMG5Q96IX5 58 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 REG4Q9BYZ8 158 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms