RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ATP6V1FQ16864 119 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 DEFB112Q30KQ8 113 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 DPPA3Q6W0C5 159 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 RBMS3Q6XE24 437 aaKnown RBP9.6□□□□□ -0.87
CLIP1-208ENST00000537004 LINC00311Q8N616 119 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 LY6G5BQ8NDX9 201 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 LFNGQ8NES3 379 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 CLCC1Q96S66 551 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 CARHSP1Q9Y2V2 147 aaKnown RBP9.6□□□□□ -0.87
CLIP1-208ENST00000537004 PLXNB1O43157 2135 aa9.6□□□□□ -0.87
CLIP1-208ENST00000537004 C15orf62A8K5M9 175 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 GPR37O15354 613 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 ARG1P05089 322 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 S100A8P05109 93 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 SFTA3P0C7M3 94 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 GUK1Q16774 197 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 FAM209BQ5JX69 171 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 VMO1Q7Z5L0 202 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 C11orf42Q8N5U0 333 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 Q8N7P7 452 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 TMEM147Q9BVK8 224 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 SCRT1Q9BWW7 348 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 SEC11CQ9BY50 192 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 HIPK2Q9H2X6 1198 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 HEYLQ9NQ87 328 aaPredicted RBP9.59□□□□□ -0.87
CLIP1-208ENST00000537004 TNFRSF19Q9NS68 423 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 TMEM14BQ9NUH8 114 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 TCF19Q9Y242 345 aa9.59□□□□□ -0.87
CLIP1-208ENST00000537004 FOXA2Q9Y261 457 aaPredicted RBP9.59□□□□□ -0.87
CLIP1-208ENST00000537004 A0A1W2PRD5 423 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 A0A1W2PRF3 423 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 A0A1W2PRM7 423 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 C9JQL5 133 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 APOA2P02652 100 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 VDAC2P45880 294 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-208ENST00000537004 REG1BP48304 166 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 RPP30P78346 268 aaKnown RBP9.58□□□□□ -0.88
CLIP1-208ENST00000537004 KLRD1Q13241 179 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 GUCA2BQ16661 112 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 FAM71F2Q6NXP2 309 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 ZNF600Q6ZNG1 722 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 C9orf139Q6ZV77 190 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 OR9G1Q8NH87 305 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 EIF5A2Q9GZV4 153 aaKnown RBP9.58□□□□□ -0.88
CLIP1-208ENST00000537004 LINC00587B1AMM8 73 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 H0YJW9 148 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 SCAF4O95104 1147 aaKnown RBP9.58□□□□□ -0.88
CLIP1-208ENST00000537004 IFNA10P01566 189 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 FABP1P07148 127 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 PRTN3P24158 256 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 SERF2P84101 59 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 TMEM88Q6PEY1 159 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 SPSB3Q6PJ21 355 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 ABHD12Q8N2K0 398 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 PIP4P2Q8N4L2 257 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 OR5AN1Q8NGI8 311 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 ST6GALNAC6Q969X2 333 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 JMJD8Q96S16 334 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 TMEM133Q9H2Q1 129 aa9.58□□□□□ -0.88
CLIP1-208ENST00000537004 BTBD17A6NE02 478 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 SRRM4A7MD48 611 aaKnown RBP9.57□□□□□ -0.88
CLIP1-208ENST00000537004 HOXA3O43365 443 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-208ENST00000537004 EIF3GO75821 320 aaKnown RBP eCLIP9.57□□□□□ -0.88
CLIP1-208ENST00000537004 IL6RP08887 468 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-208ENST00000537004 HSPE1P61604 102 aaKnown RBP9.57□□□□□ -0.88
CLIP1-208ENST00000537004 CCL20P78556 96 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 DIAPH2-AS1Q14236 149 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 PEA15Q15121 130 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 VWC2Q2TAL6 325 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 PNKDQ8N490 385 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 OSR1Q8TAX0 266 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-208ENST00000537004 PBDC1Q9BVG4 233 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 VSIRQ9H7M9 311 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 RPRMQ9NS64 109 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 PRNDQ9UKY0 176 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 TIMM9Q9Y5J7 89 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 KPTNQ9Y664 436 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 PKD1L1Q8TDX9 2849 aa9.57□□□□□ -0.88
CLIP1-208ENST00000537004 IGHV1-69DA0A0B4J2H0 117 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 A0A0U1RQK1 487 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 UPK2O00526 184 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 IGHV1-69P01742 117 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 S100A9P06702 114 aaKnown RBP9.56□□□□□ -0.88
CLIP1-208ENST00000537004 SAA1P0DJI8 122 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-208ENST00000537004 FOLR2P14207 255 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 FGF7P21781 194 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 ZNF137PP52743 207 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 CBLN2Q8IUK8 224 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 C8orf46Q8TAG6 207 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 OR51B2Q9Y5P1 312 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 A0A1B0GW64 132 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 A0A1W2PPH5 198 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 RRHO14718 337 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 CRYBA1P05813 215 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 MYOD1P15172 320 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 PPT1P50897 306 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 ELLP55199 621 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-208ENST00000537004 HNF4GQ14541 408 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 TMEM177Q53S58 311 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 CENPVQ7Z7K6 275 aaPredicted RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms