RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 OR2C3Q8N628 320 aa9.91□□□□□ -0.82
VPS28-216ENST00000533806 ZNF114Q8NC26 417 aa9.91□□□□□ -0.82
VPS28-216ENST00000533806 ZNF502Q8TBZ5 544 aa9.91□□□□□ -0.82
VPS28-216ENST00000533806 RBPMSQ93062 196 aaKnown RBP9.91□□□□□ -0.82
VPS28-216ENST00000533806 IL22RA2Q969J5 263 aa9.91□□□□□ -0.82
VPS28-216ENST00000533806 SLC25A21Q9BQT8 299 aaPredicted RBP9.91□□□□□ -0.82
VPS28-216ENST00000533806 ZMAT5Q9UDW3 170 aaKnown RBP9.91□□□□□ -0.82
VPS28-216ENST00000533806 TRBV7-1A0A0A6YYK4 115 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 ST8SIA3O43173 380 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 AKR1C2P52895 323 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 SYNJ2BPP57105 145 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 PVRIGQ6DKI7 326 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 SGPP2Q8IWX5 399 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 OR9G4Q8NGQ1 327 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 OR1P1Q8NH06 330 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 VN1R17PQ8TDU5 208 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 CXorf58Q96LI9 332 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 HINT2Q9BX68 163 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 SIGLEC8Q9NYZ4 499 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 KCNIP3Q9Y2W7 256 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 S4R3C0 116 aa9.9□□□□□ -0.82
VPS28-216ENST00000533806 PPP5D1E7EU14 171 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 F8W735 103 aaPredicted RBP9.89□□□□□ -0.83
VPS28-216ENST00000533806 K7EIM0 57 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 GGCTO75223 188 aaKnown RBP9.89□□□□□ -0.83
VPS28-216ENST00000533806 SAP30O75446 220 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 IGLV1-51P01701 117 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 IGHV3-23P01764 117 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 CLEC3BP05452 202 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 CSN3P07498 182 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 IL7P13232 177 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 AKR1C4P17516 323 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 MECP2P51608 486 aaKnown RBP9.89□□□□□ -0.83
VPS28-216ENST00000533806 RPEL1Q2QD12 228 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 CNPY1Q3B7I2 92 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 TMEM128Q5BJH2 165 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 TMEM268Q5VZI3 342 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 CLEC19AQ6UXS0 136 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 ADAMTSL5Q6ZMM2 481 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 GPHB5Q86YW7 130 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 OR1L6Q8NGR2 347 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 EEF1AKMT3Q96AZ1 226 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 GPR146Q96CH1 333 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 RRNAD1Q96FB5 475 aaKnown RBP9.89□□□□□ -0.83
VPS28-216ENST00000533806 ATP6V0BQ99437 205 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 PRR13Q9NZ81 148 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 THYN1Q9P016 225 aa9.89□□□□□ -0.83
VPS28-216ENST00000533806 NAP1L6A6NFF2 107 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 LGALS9O00182 355 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 OR2C1O95371 312 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 HLA-AP01891 365 aaKnown RBP9.88□□□□□ -0.83
VPS28-216ENST00000533806 BTCP35070 178 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 CCR6P51684 374 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 NMSQ5H8A3 153 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 ZNF57Q68EA5 555 aaPredicted RBP9.88□□□□□ -0.83
VPS28-216ENST00000533806 SLC25A24Q6NUK1 477 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 SLC35G3Q8N808 338 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 OR52E5Q8NH55 327 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 MRAPQ8TCY5 172 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.88□□□□□ -0.83
VPS28-216ENST00000533806 LSM4Q9Y4Z0 139 aaKnown RBP9.88□□□□□ -0.83
VPS28-216ENST00000533806 COL7A1Q02388 2944 aa9.88□□□□□ -0.83
VPS28-216ENST00000533806 A0A0B4J2A0 478 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 I3L2K1 104 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 PLA2G10O15496 165 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 CYB5BO43169 146 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 NDUFB6O95139 128 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 ARL3P36405 182 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 RBMS2Q15434 407 aaKnown RBP9.87□□□□□ -0.83
VPS28-216ENST00000533806 TATDN3Q17R31 274 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 BSXQ3C1V8 233 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 TRIQKQ629K1 86 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 LYZL2Q7Z4W2 148 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 LRTM2Q8N967 370 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 SCARB1Q8WTV0 552 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 ZNF414Q96IQ9 312 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 OR4C12Q96R67 309 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 ELOVL1Q9BW60 279 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 PLEKHA3Q9HB20 300 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 SHPKQ9UHJ6 478 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 ZNF256Q9Y2P7 627 aaPredicted RBP9.87□□□□□ -0.83
VPS28-216ENST00000533806 DNAH9Q9NYC9 4486 aa9.87□□□□□ -0.83
VPS28-216ENST00000533806 IFNA17P01571 189 aa9.86□□□□□ -0.83
VPS28-216ENST00000533806 FCGR2BP31994 310 aaPredicted RBP9.86□□□□□ -0.83
VPS28-216ENST00000533806 SPCS3P61009 180 aa9.86□□□□□ -0.83
VPS28-216ENST00000533806 ERHP84090 104 aaKnown RBP9.86□□□□□ -0.83
VPS28-216ENST00000533806 ANKRD55Q3KP44 614 aa9.86□□□□□ -0.83
VPS28-216ENST00000533806 SPINK9Q5DT21 86 aa9.86□□□□□ -0.83
VPS28-216ENST00000533806 TMED4Q7Z7H5 227 aa9.86□□□□□ -0.83
VPS28-216ENST00000533806 PRR25Q96S07 402 aa9.86□□□□□ -0.83
VPS28-216ENST00000533806 C7orf50Q9BRJ6 194 aaKnown RBP9.86□□□□□ -0.83
VPS28-216ENST00000533806 CACNG5Q9UF02 275 aa9.86□□□□□ -0.83
VPS28-216ENST00000533806 A8MWP6 167 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 SFT2D2O95562 160 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 CTSGP08311 255 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 RNASE2P10153 161 aaKnown RBP9.85□□□□□ -0.83
VPS28-216ENST00000533806 SPNP16150 400 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 GPR183P32249 361 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 ADMP35318 185 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 SRPXP78539 464 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms