RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 OR4D10Q8NGI6 311 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 OR1P1Q8NH06 330 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 MUC7Q8TAX7 377 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 MARC2Q969Z3 335 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 WDR89Q96FK6 387 aaPredicted RBP10.04□□□□□ -0.8
VPS28-211ENST00000530790 BCL7BQ9BQE9 202 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 MIXL1Q9H2W2 232 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 CCDC59Q9P031 241 aaKnown RBP10.04□□□□□ -0.8
VPS28-211ENST00000530790 MLXQ9UH92 298 aa10.04□□□□□ -0.8
VPS28-211ENST00000530790 IGHV3-21A0A0B4J1V1 117 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 ZNF785A8K8V0 405 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 ATG12O94817 140 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 CD74P04233 296 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 CD7P09564 240 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 AKR1C2P52895 323 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 MFAP2P55001 183 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 ELLP55199 621 aaPredicted RBP10.03□□□□□ -0.8
VPS28-211ENST00000530790 PRCDQ00LT1 54 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 SSBP1Q04837 148 aaKnown RBP10.03□□□□□ -0.8
VPS28-211ENST00000530790 HAGHQ16775 308 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 TM4SF20Q53R12 229 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 STEAP1BQ6NZ63 245 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 SPSB3Q6PJ21 355 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 SLC16A13Q7RTY0 426 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 UBAC2Q8NBM4 344 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 ZFAND1Q8TCF1 268 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 TMEM190Q8WZ59 177 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 TP53RKQ96S44 253 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 ATP6V0BQ99437 205 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 ZNF436Q9C0F3 470 aaPredicted RBP10.03□□□□□ -0.8
VPS28-211ENST00000530790 COPZ2Q9P299 210 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 SELENOKQ9Y6D0 94 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 CEPT1Q9Y6K0 416 aa10.03□□□□□ -0.8
VPS28-211ENST00000530790 KMT2CQ8NEZ4 4911 aaKnown RBP10.03□□□□□ -0.8
VPS28-211ENST00000530790 C3orf85A0A1B0GTC6 90 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 OR11H12B2RN74 326 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 K7EIM0 57 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 CTDSP2O14595 271 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 TMBIM6P55061 237 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 IL18Q14116 193 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 MEF2DQ14814 521 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 TRIM16LQ309B1 348 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 Q56UQ5 140 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 DEFB125Q8N687 156 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 ZNF114Q8NC26 417 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 OR13C8Q8NGS7 320 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 TERB2Q8NHR7 220 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 SCARB1Q8WTV0 552 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 SMIM4Q8WVI0 70 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 ISOC1Q96CN7 298 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 MISP3Q96FF7 219 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 CITED4Q96RK1 184 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 WFDC10AQ9H1F0 79 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 SRD5A3Q9H8P0 318 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 DAZ1Q9NQZ3 744 aaKnown RBP10.02□□□□□ -0.81
VPS28-211ENST00000530790 MRPL27Q9P0M9 148 aaKnown RBP10.02□□□□□ -0.81
VPS28-211ENST00000530790 HUWE1Q7Z6Z7 4374 aaKnown RBP10.02□□□□□ -0.81
VPS28-211ENST00000530790 NBEAL2Q6ZNJ1 2754 aa10.02□□□□□ -0.81
VPS28-211ENST00000530790 NDUFA4O00483 81 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 SCAF4O95104 1147 aaKnown RBP10.01□□□□□ -0.81
VPS28-211ENST00000530790 HSPE1P61604 102 aaKnown RBP10.01□□□□□ -0.81
VPS28-211ENST00000530790 ANKRD55Q3KP44 614 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 RBPMS2Q6ZRY4 209 aaKnown RBP10.01□□□□□ -0.81
VPS28-211ENST00000530790 OR2C3Q8N628 320 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 SLC35G3Q8N808 338 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 OR52B4Q8NGK2 314 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 RNASE11Q8TAA1 199 aaKnown RBP10.01□□□□□ -0.81
VPS28-211ENST00000530790 MARCH1Q8TCQ1 289 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 DYNC2LI1Q8TCX1 351 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 DIRAS2Q96HU8 199 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 PDCD10Q9BUL8 212 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 C6orf62Q9GZU0 229 aaPredicted RBP10.01□□□□□ -0.81
VPS28-211ENST00000530790 GAR1Q9NY12 217 aaKnown RBP10.01□□□□□ -0.81
VPS28-211ENST00000530790 RABL2AQ9UBK7 228 aaPredicted RBP10.01□□□□□ -0.81
VPS28-211ENST00000530790 RABL2BQ9UNT1 228 aa10.01□□□□□ -0.81
VPS28-211ENST00000530790 C14orf166Q9Y224 244 aaKnown RBP10.01□□□□□ -0.81
VPS28-211ENST00000530790 TRAV25A0A0B4J276 109 aa10□□□□□ -0.81
VPS28-211ENST00000530790 DISC1C4P0D8 188 aa10□□□□□ -0.81
VPS28-211ENST00000530790 F8W735 103 aaPredicted RBP10□□□□□ -0.81
VPS28-211ENST00000530790 B3GALNT1O75752 331 aa10□□□□□ -0.81
VPS28-211ENST00000530790 IGKV1-5P01602 117 aa10□□□□□ -0.81
VPS28-211ENST00000530790 CTSDP07339 412 aaPredicted RBP10□□□□□ -0.81
VPS28-211ENST00000530790 C8orf88P0DMB2 117 aa10□□□□□ -0.81
VPS28-211ENST00000530790 LYL1P12980 280 aa10□□□□□ -0.81
VPS28-211ENST00000530790 ERHP84090 104 aaKnown RBP10□□□□□ -0.81
VPS28-211ENST00000530790 RELQ04864 619 aaPredicted RBP10□□□□□ -0.81
VPS28-211ENST00000530790 IZUMO4Q1ZYL8 232 aa10□□□□□ -0.81
VPS28-211ENST00000530790 FAAP20Q6NZ36 180 aa10□□□□□ -0.81
VPS28-211ENST00000530790 CHRDL1Q9BU40 450 aa10□□□□□ -0.81
VPS28-211ENST00000530790 C20orf24Q9BUV8 137 aa10□□□□□ -0.81
VPS28-211ENST00000530790 I3L2K1 104 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 CTDSPLO15194 276 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 NUPL2O15504 423 aaKnown RBP9.99□□□□□ -0.81
VPS28-211ENST00000530790 IFNA17P01571 189 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 P0C879 139 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 AKAIN1P0CW23 69 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 UCP1P25874 307 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 ADMP35318 185 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 RPL5P46777 297 aaKnown RBP9.99□□□□□ -0.81
VPS28-211ENST00000530790 HOXA1P49639 335 aaPredicted RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms