RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ZNF773Q6PK81 442 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 Q6Q795 121 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 TMEM14EPQ6UXP3 125 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 DGAT2L6Q6ZPD8 337 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 Q6ZRU5 148 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 CAMK2N1Q7Z7J9 78 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 ZDHHC22Q8N966 263 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 LINC00301Q8NCQ3 95 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 OR2M3Q8NG83 312 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 OR4C16Q8NGL9 310 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 PSMF1Q92530 271 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 KLK6Q92876 244 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 YPEL4Q96NS1 127 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 CIB3Q96Q77 187 aaPredicted RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 OR2A7Q96R45 310 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 PITX2Q99697 317 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 SPIN2AQ99865 258 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 SPIN2BQ9BPZ2 258 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 TSSK6Q9BXA6 273 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 SLC25A2Q9BXI2 301 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 SEC11CQ9BY50 192 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 MRPL32Q9BYC8 188 aaKnown RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 DPY30Q9C005 99 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 WDR61Q9GZS3 305 aaKnown RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 LINC00597Q9H2U6 94 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 NPVFQ9HCQ7 196 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 ZNF331Q9NQX6 463 aaPredicted RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 ASF1BQ9NVP2 202 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 TVP23BQ9NYZ1 205 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 MTFP1Q9UDX5 166 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 POMPQ9Y244 141 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 ENPP4Q9Y6X5 453 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 ERVK-7P63135 1459 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 MAGI2Q86UL8 1455 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 HMGXB3Q12766 1538 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 DISP1Q96F81 1524 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 UGGT2Q9NYU1 1516 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 ZCCHC11Q5TAX3 1644 aaKnown RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 CTTNBP2Q8WZ74 1663 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 TRAV8-4A0A0B4J246 113 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 PLAC8L1A1L4L8 177 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 CD300LBA8K4G0 201 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 ZNF670-ZNF695F2Z2N8 137 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 J3QT63 122 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 M0R233 179 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 TAX1BP3O14907 124 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 DPM2O94777 84 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 INSP01308 110 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 TNFP01375 233 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 IGHV4-34P06331 123 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 SLC35G6P0C7Q6 338 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 P0DMU3 169 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 FAM231AP0DMU4 169 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 FAM231CP0DMU5 169 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 FKBP2P26885 142 aaKnown RBP2.3□□□□□ -2.04
CD44-229ENST00000528672 PSMB9P28065 219 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 LPAR6P43657 344 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 NMUP48645 174 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 ZNF138P52744 262 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 RPS24P62847 133 aaKnown RBP2.3□□□□□ -2.04
CD44-229ENST00000528672 AKR1C1Q04828 323 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 MMDQ15546 238 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 IL17AQ16552 155 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 TMEM183BQ1AE95 376 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 DNAJC24Q6P3W2 148 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 Q6ZR54 194 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 TMEM183AQ8IXX5 376 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 ANKRD29Q8N6D5 301 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 TEX29Q8N6K0 151 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 OR5D14Q8NGL3 314 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 OR8S1Q8NH09 359 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 C10orf82Q8WW14 230 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 SLC25A46Q96AG3 418 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 SLC25A44Q96H78 314 aaPredicted RBP2.3□□□□□ -2.04
CD44-229ENST00000528672 VAMP8Q9BV40 100 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 TMEM147Q9BVK8 224 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 PARP12Q9H0J9 701 aaKnown RBP2.3□□□□□ -2.04
CD44-229ENST00000528672 TCEAL2Q9H3H9 227 aaPredicted RBP2.3□□□□□ -2.04
CD44-229ENST00000528672 POMKQ9H5K3 350 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 HEBP1Q9NRV9 189 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 KCNIP2Q9NS61 270 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 FKBP11Q9NYL4 201 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 RBM12B-AS1Q9P1G2 102 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 LINC00312Q9Y6C7 94 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 RAPGEF6Q8TEU7 1601 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 BCORL1Q5H9F3 1711 aa2.3□□□□□ -2.04
CD44-229ENST00000528672 ZNF646O15015 1829 aaPredicted RBP2.3□□□□□ -2.04
CD44-229ENST00000528672 ATRXP46100 2492 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 MYH2Q9UKX2 1941 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 XIRP1Q702N8 1843 aaKnown RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 SLIT3O75094 1523 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 TECPR2O15040 1411 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 RIC1Q4ADV7 1423 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 ANKRD50Q9ULJ7 1429 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 hCG_1818297A0A087WSY0 165 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 A0A087X0T9 212 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 TRAV8-2A0A0B4J237 113 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 TRAV4A0A0B4J268 109 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 A0A1W2PP18 115 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 IGLC7A0M8Q6 106 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms