RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 CSMD1Q96PZ7 3565 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 CSMD2Q7Z408 3487 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 C17orf112F2Z3M2 114 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 CORTO00230 105 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 SMAD7O15105 426 aaKnown RBP12.74□□□□□ -0.37
NUP54-214ENST00000514307 FGF16O43320 207 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 SOX15O60248 233 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 RNASE2P10153 161 aaKnown RBP12.74□□□□□ -0.37
NUP54-214ENST00000514307 SPP1P10451 314 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 CX3CL1P78423 397 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 BLOC1S1P78537 153 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 WT1-ASQ06250 92 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 VWC2Q2TAL6 325 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 C9orf139Q6ZV77 190 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 C16orf82Q7Z2V1 217 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 Q8N9W7 124 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 OR2G3Q8NGZ4 309 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 ABHD5Q8WTS1 349 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 SAT2Q96F10 170 aaPredicted RBP12.74□□□□□ -0.37
NUP54-214ENST00000514307 TMEM68Q96MH6 324 aa12.74□□□□□ -0.37
NUP54-214ENST00000514307 CGB1A6NKQ9 187 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 E7EUB6 86 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 TRIM77I1YAP6 450 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 HLA-DRB1P01911 266 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 ATP6V0CP27449 155 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 SERF2P84101 59 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 TUSC1Q2TAM9 212 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 C10orf55Q5SWW7 151 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 ZNF114Q8NC26 417 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 OR1P1Q8NH06 330 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 PIFOQ8TCI5 191 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 SSMEM1Q8WWF3 244 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 TAF15Q92804 592 aaKnown RBP eCLIP12.73□□□□□ -0.37
NUP54-214ENST00000514307 P2RX4Q99571 388 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 SLC25A33Q9BSK2 321 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 WDR61Q9GZS3 305 aaKnown RBP12.73□□□□□ -0.37
NUP54-214ENST00000514307 MOB4Q9Y3A3 225 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 FBXO7Q9Y3I1 522 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 TIMM9Q9Y5J7 89 aa12.73□□□□□ -0.37
NUP54-214ENST00000514307 RPS10-NUDT3A0A1W2PQS6 291 aa12.72□□□□□ -0.37
NUP54-214ENST00000514307 IGLC7A0M8Q6 106 aa12.72□□□□□ -0.37
NUP54-214ENST00000514307 BTBD17A6NE02 478 aa12.72□□□□□ -0.37
NUP54-214ENST00000514307 FSHBP01225 129 aa12.72□□□□□ -0.37
NUP54-214ENST00000514307 SULT1A2P50226 295 aa12.72□□□□□ -0.37
NUP54-214ENST00000514307 OR5R1Q8NH85 324 aa12.72□□□□□ -0.37
NUP54-214ENST00000514307 ARPC1AQ92747 370 aa12.72□□□□□ -0.37
NUP54-214ENST00000514307 PSMG3Q9BT73 122 aaPredicted RBP12.72□□□□□ -0.37
NUP54-214ENST00000514307 TACC2O95359 2948 aa12.72□□□□□ -0.37
NUP54-214ENST00000514307 POLQO75417 2590 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 SMCO3A2RU48 225 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 A6NDX4 124 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 TEX22C9J3V5 150 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 H3BUX3 64 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 MBP02144 154 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 PRH1P02810 166 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 DEFA4P12838 97 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 BTNL8Q6UX41 500 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 CENPVQ7Z7K6 275 aaPredicted RBP12.71□□□□□ -0.37
NUP54-214ENST00000514307 TMEM170AQ8WVE7 144 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 SLC35E1Q96K37 410 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 KCNIP2Q9NS61 270 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 WDR83OSQ9Y284 106 aa12.71□□□□□ -0.37
NUP54-214ENST00000514307 ZNF705EA8MWA4 302 aaPredicted RBP12.7□□□□□ -0.38
NUP54-214ENST00000514307 PRSS46E5RG02 174 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 CD5LO43866 347 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 FAM157CP0CG43 387 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 FGF7P21781 194 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 CD69Q07108 199 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 DEFB112Q30KQ8 113 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 AKR1C8PQ5T2L2 129 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 PVRIGQ6DKI7 326 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 TEPPQ6URK8 271 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 DPPA3Q6W0C5 159 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 CIARTQ8N365 385 aaPredicted RBP12.7□□□□□ -0.38
NUP54-214ENST00000514307 TTC9CQ8N5M4 171 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 WNT10AQ9GZT5 417 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 F11RQ9Y624 299 aaKnown RBP12.7□□□□□ -0.38
NUP54-214ENST00000514307 APCP25054 2843 aa12.7□□□□□ -0.38
NUP54-214ENST00000514307 UBE2L5PA0A1B0GUS4 154 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 A0A1B0GW64 132 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 LINC00862A6NCI5 91 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 NPIPB5A8MRT5 1133 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 CRYGCP07315 174 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 HNF1AP20823 631 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 MDKP21741 143 aaPredicted RBP12.69□□□□□ -0.38
NUP54-214ENST00000514307 SCGB2A2Q13296 93 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 TMEM144Q7Z5S9 345 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 C5orf56Q8N8D9 126 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 C22orf15Q8WYQ4 148 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 THYN1Q9P016 225 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 PFDN2Q9UHV9 154 aa12.69□□□□□ -0.38
NUP54-214ENST00000514307 IGHV7-81A0A0B4J1V7 117 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 NUDT19A8MXV4 375 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 TEX46H3BTG2 121 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 NMBP08949 121 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 AREGP15514 252 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 HIST1H1BP16401 226 aaKnown RBP12.68□□□□□ -0.38
NUP54-214ENST00000514307 SRP14P37108 136 aaKnown RBP12.68□□□□□ -0.38
NUP54-214ENST00000514307 CAMLGP49069 296 aa12.68□□□□□ -0.38
NUP54-214ENST00000514307 AKR1C1Q04828 323 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms