RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 VSIRQ9H7M9 311 aa6.72□□□□□ -1.33
RNF4-220ENST00000513578 TREM1Q9NP99 234 aa6.72□□□□□ -1.33
RNF4-220ENST00000513578 SIRT7Q9NRC8 400 aa6.72□□□□□ -1.33
RNF4-220ENST00000513578 RBFOX3A6NFN3 312 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 F8W036 122 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 TIMM23O14925 209 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 MOSP00540 346 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 APOC3P02656 99 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 HSPB1P04792 205 aaKnown RBP6.71□□□□□ -1.34
RNF4-220ENST00000513578 COX6B1P14854 86 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 RPL27AP46776 148 aaKnown RBP6.71□□□□□ -1.34
RNF4-220ENST00000513578 RPL29P47914 159 aaKnown RBP6.71□□□□□ -1.34
RNF4-220ENST00000513578 DLX1P56177 255 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 CCL20P78556 96 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 PAX8Q06710 450 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 RAB31Q13636 194 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 ARSJQ5FYB0 599 aaPredicted RBP6.71□□□□□ -1.34
RNF4-220ENST00000513578 FFAR4Q5NUL3 377 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 TEPPQ6URK8 271 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 PPP1R27Q86WC6 154 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 SVBPQ8N300 66 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 RPP25LQ8N5L8 163 aaKnown RBP6.71□□□□□ -1.34
RNF4-220ENST00000513578 Q8N6K4 173 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 OR2T10Q8NGZ9 312 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 SFT2D1Q8WV19 159 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 MALSU1Q96EH3 234 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 C1orf159Q96HA4 380 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 TBX15Q96SF7 602 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 MGST2Q99735 147 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 GGTLC1Q9BX51 225 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 HINT2Q9BX68 163 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 ACTR3CQ9C0K3 210 aaPredicted RBP6.71□□□□□ -1.34
RNF4-220ENST00000513578 NARFLQ9H6Q4 476 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 LPAR2Q9HBW0 351 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 FAM96BQ9Y3D0 163 aa6.71□□□□□ -1.34
RNF4-220ENST00000513578 IGHV3-72A0A0B4J1Y9 119 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 LOC102723971A0A1B0GUV8 181 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 IGLC7A0M8Q6 106 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 C9JQL5 133 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 E7EUB6 86 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 CORTO00230 105 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 AGPAT2O15120 278 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 TOX4O94842 621 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 IFNA1P01562 189 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 IGKV1D-33P01593 117 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 IGKV1-33P01594 117 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 CRYGCP07315 174 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 SNRNP70P08621 437 aaKnown RBP6.7□□□□□ -1.34
RNF4-220ENST00000513578 SFTA3P0C7M3 94 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 PPT1P50897 306 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 LCN2P80188 198 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 PRR20EP86478 221 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 PRR20CP86479 221 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 PRR20DP86480 221 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 PRR20BP86481 221 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 PRR20AP86496 221 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 AKR1C1Q04828 323 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 WT1-ASQ06250 92 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 KLRD1Q13241 179 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 ZNF787Q6DD87 383 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 CLEC2AQ6UVW9 174 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 OR10W1Q8NGF6 305 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 OR10G9Q8NGN4 311 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 OR10G7Q8NGN6 311 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 NARS2Q96I59 477 aaKnown RBP6.7□□□□□ -1.34
RNF4-220ENST00000513578 EAF1Q96JC9 268 aaPredicted RBP6.7□□□□□ -1.34
RNF4-220ENST00000513578 P2RX4Q99571 388 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 EIF5A2Q9GZV4 153 aaKnown RBP6.7□□□□□ -1.34
RNF4-220ENST00000513578 SLC35B3Q9H1N7 401 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 TMEM231Q9H6L2 316 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 SLC39A9Q9NUM3 307 aa6.7□□□□□ -1.34
RNF4-220ENST00000513578 METTL1Q9UBP6 276 aaKnown RBP6.7□□□□□ -1.34
RNF4-220ENST00000513578 MAP1LC3B2A6NCE7 125 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 NBR2O15453 112 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 PLXNB1O43157 2135 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 ACTL6BO94805 426 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 YIF1AO95070 293 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 SNAPINO95295 136 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 OPN1MWP04001 364 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 SRP19P09132 144 aaKnown RBP6.69□□□□□ -1.34
RNF4-220ENST00000513578 OPN1MW2P0DN77 364 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 OPN1MW3P0DN78 364 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 SLC25A16P16260 332 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 CNTFRP26992 372 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 ELLP55199 621 aaPredicted RBP6.69□□□□□ -1.34
RNF4-220ENST00000513578 ATP5J2P56134 94 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 LGALS4P56470 323 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 SSBP2P81877 361 aaPredicted RBP6.69□□□□□ -1.34
RNF4-220ENST00000513578 GAMTQ14353 236 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 ICAM4Q14773 271 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 ETFRF1Q6IPR1 90 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 RBMS3Q6XE24 437 aaKnown RBP6.69□□□□□ -1.34
RNF4-220ENST00000513578 LHFPL4Q7Z7J7 247 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 THAP8Q8NA92 274 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 OR1L6Q8NGR2 347 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 OR1P1Q8NH06 330 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 AJUBAQ96IF1 538 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 SLC35E1Q96K37 410 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 C19orf24Q9BVV8 132 aa6.69□□□□□ -1.34
RNF4-220ENST00000513578 MAP1LC3BQ9GZQ8 125 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms