RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 P0DMU3 169 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 FAM231AP0DMU4 169 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 FAM231CP0DMU5 169 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 HINT1P49773 126 aaPredicted RBP1.73□□□□□ -2.13
USP53-204ENST00000507906 AP1S1P61966 158 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 POLR2GP62487 172 aaKnown RBP eCLIP1.73□□□□□ -2.13
USP53-204ENST00000507906 HBA1P69905 142 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 CCL20P78556 96 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 ZNF90Q03938 601 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 C12orf74Q32Q52 190 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 C12orf45Q8N5I9 185 aaPredicted RBP1.73□□□□□ -2.13
USP53-204ENST00000507906 OR52L1Q8NGH7 329 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 OR51A2Q8NGJ7 313 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 OR10X1Q8NGY0 326 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 OR5J2Q8NH18 312 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 ACOT12Q8WYK0 555 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 NIPSNAP1Q9BPW8 284 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 DERL1Q9BUN8 251 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 PRTFDC1Q9NRG1 225 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 DOK5Q9P104 306 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 MYO5CQ9NQX4 1742 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 CCDC18Q5T9S5 1454 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 PLEKHH2Q8IVE3 1493 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 TEX14Q8IWB6 1497 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 CECR2Q9BXF3 1484 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 BLMP54132 1417 aaPredicted RBP1.73□□□□□ -2.13
USP53-204ENST00000507906 KDM6BO15054 1643 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 CFAP74Q9C0B2 1584 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 MYH7P12883 1935 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 MYH13Q9UKX3 1938 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 PLXNB1O43157 2135 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 PXDNLA1KZ92 1463 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 MBD5Q9P267 1494 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 TRAV41A0A0B4J266 112 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 DPRXA6NFQ7 191 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 KLRC4O43908 158 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 PGLYRP1O75594 196 aaPredicted RBP1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST1H2BOP23527 126 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST1H2BBP33778 126 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST1H2BDP58876 126 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST1H2BCP62807 126 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST1H3AP68431 136 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 H3F3AP84243 136 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST2H2BEQ16778 126 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 IAH1Q2TAA2 248 aaPredicted RBP1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.72□□□□□ -2.13
USP53-204ENST00000507906 C9orf64Q5T6V5 341 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 FAM27BQ5VT28 67 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 TMEM42Q69YG0 159 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 FAM173BQ6P4H8 233 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 LYZL1Q6UWQ5 148 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 ZNF705AQ6ZN79 300 aaPredicted RBP1.72□□□□□ -2.13
USP53-204ENST00000507906 DYNAPQ8N1N2 210 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 RNASE11Q8TAA1 199 aaKnown RBP1.72□□□□□ -2.13
USP53-204ENST00000507906 RASSF5Q8WWW0 418 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST1H2BHQ93079 126 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 BORCS7Q96B45 105 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST1H2BNQ99877 126 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HIST1H2BMQ99879 126 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 TIMM21Q9BVV7 248 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 TRIM4Q9C037 500 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 VCX3BQ9H321 246 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 XAGE1AQ9HD64 81 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 RSL24D1Q9UHA3 163 aaKnown RBP1.72□□□□□ -2.13
USP53-204ENST00000507906 CYSLTR1Q9Y271 337 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 TMEM56-RWDD3S4R434 201 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 KIF20BQ96Q89 1820 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 SMARCA4P51532 1647 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 CLTCL1P53675 1640 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 TOP2BQ02880 1626 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 CAMSAP1Q5T5Y3 1602 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 MIA2Q96PC5 1412 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 UACAQ9BZF9 1416 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 HMCN1Q96RW7 5635 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 EIF3AQ14152 1382 aaKnown RBP1.72□□□□□ -2.13
USP53-204ENST00000507906 KIF24Q5T7B8 1368 aa1.72□□□□□ -2.13
USP53-204ENST00000507906 EPRSP07814 1512 aaKnown RBP1.71□□□□□ -2.14
USP53-204ENST00000507906 ABCC2Q92887 1545 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 RALGAPA2Q2PPJ7 1873 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 ZNF532Q9HCE3 1301 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 MYOM1P52179 1685 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 ADGBQ8N7X0 1667 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 LRRC9Q6ZRR7 1453 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 NEO1Q92859 1461 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 PRXQ9BXM0 1461 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 ARHGAP35Q9NRY4 1499 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 TRPM1Q7Z4N2 1603 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 TRAV38-1A0A0B4J264 116 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 IGHV1-18A0A0C4DH31 117 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 ZNF705FA8MVS1 300 aaPredicted RBP1.71□□□□□ -2.14
USP53-204ENST00000507906 BUB1B-PAK6H3BSN5 160 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 PDE6DO43924 150 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 NOS1APO75052 506 aaPredicted RBP1.71□□□□□ -2.14
USP53-204ENST00000507906 ZNF682O95780 498 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 CRYZL1O95825 349 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 SULT1A3P0DMM9 295 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 SULT1A4P0DMN0 295 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 MSNP26038 577 aaKnown RBP1.71□□□□□ -2.14
USP53-204ENST00000507906 SERPINB9P50453 376 aa1.71□□□□□ -2.14
USP53-204ENST00000507906 AQP4P55087 323 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms