RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 NDUFS7O75251 213 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 OR5G3P0C626 314 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 KHDC3LQ587J8 217 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 SOHLH1Q5JUK2 328 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 TMEM144Q7Z5S9 345 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 Q8WTZ3 238 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 SSMEM1Q8WWF3 244 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 EIF3GO75821 320 aaKnown RBP eCLIP6.78□□□□□ -1.32
USP54-215ENST00000497106 GUK1Q16774 197 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 LBHQ53QV2 105 aaPredicted RBP6.78□□□□□ -1.32
USP54-215ENST00000497106 UNQ5815/PRO19632Q6UWF5 114 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 Q6ZRM9 215 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 SIRPDQ9H106 197 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 CYTL1Q9NRR1 136 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 POLR3KQ9Y2Y1 108 aaPredicted RBP6.78□□□□□ -1.32
USP54-215ENST00000497106 ANKHD1Q8IWZ3 2542 aaKnown RBP6.78□□□□□ -1.32
USP54-215ENST00000497106 REV3LO60673 3130 aa6.78□□□□□ -1.32
USP54-215ENST00000497106 CXorf1O96002 111 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 SAA4P35542 130 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 LOXL1Q08397 574 aaPredicted RBP6.77□□□□□ -1.33
USP54-215ENST00000497106 CFAP161Q6P656 301 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 ODF3L1Q8IXM7 274 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 A6NJY4 79 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 PAX1P15863 534 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 LMO4P61968 165 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 REG4Q9BYZ8 158 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 WDR83OSQ9Y284 106 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 INS-IGF2F8WCM5 200 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 G3V3Q6 166 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 TCAPO15273 167 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 CD69Q07108 199 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 CST9LP1Q5W188 147 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 NIPSNAP3BQ9BS92 247 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 NPCDR1Q9BY65 106 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 GNG13Q9P2W3 67 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 CHTOPQ9Y3Y2 248 aaKnown RBP6.77□□□□□ -1.33
USP54-215ENST00000497106 SHANK1Q9Y566 2161 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 IGHV4-61A0A0C4DH41 118 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 RNASEK-C17orf49H0YIS7 233 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 K7EQM0 130 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 RAB9AP51151 201 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 ECSCRQ19T08 205 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 BTF3L4Q96K17 158 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 GNB4Q9HAV0 340 aa6.77□□□□□ -1.33
USP54-215ENST00000497106 ELOA3CA0A087WX78 387 aaPredicted RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 ODF3BA8MYP8 253 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 FGF16O43320 207 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 IGKV1-16P04430 117 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 OR10J1P30954 320 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 AKIRIN2Q53H80 203 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 C10orf113Q5VZT2 155 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 EEF1AKMT3Q96AZ1 226 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 CYYR1Q96J86 154 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 NDUFA4L2Q9NRX3 87 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 PCNX1Q96RV3 2341 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 IGHV4-30-2A0A087WSY4 118 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 DNASE2O00115 360 aaPredicted RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 VDAC2P45880 294 aaPredicted RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 RPL29P47914 159 aaKnown RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 NPBQ8NG41 125 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 GATAD1Q8WUU5 269 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 PCNPQ8WW12 178 aaKnown RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 ST6GALNAC6Q969X2 333 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 GRAMD2BQ96HH9 432 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 NKX6-2Q9C056 277 aaPredicted RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 OR7C2O60412 319 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 P0C879 139 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 MBD6Q96DN6 1003 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 C5orf30Q96GV9 206 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 BBC3Q96PG8 261 aaPredicted RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 JMJD8Q96S16 334 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 SPTBN5Q9NRC6 3674 aaKnown RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 RND2P52198 227 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 PQLC2Q6ZP29 291 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 CYP2G1PQ6ZSU1 146 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 SLC35E3Q7Z769 313 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 OR4F17Q8NGA8 305 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 OR4F5Q8NH21 305 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 RPUSD4Q96CM3 377 aaKnown RBP6.76□□□□□ -1.33
USP54-215ENST00000497106 OR4F4Q96R69 305 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 RSG1Q9BU20 258 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 TNFRSF19Q9NS68 423 aa6.76□□□□□ -1.33
USP54-215ENST00000497106 TLN1Q9Y490 2541 aaKnown RBP6.75□□□□□ -1.33
USP54-215ENST00000497106 ZNF292O60281 2723 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 RBFOX3A6NFN3 312 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 C15orf62A8K5M9 175 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 HYPMO75409 117 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 RUNX1Q01196 453 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 PAX8Q06710 450 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 HCP5Q6MZN7 132 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 ZNF562Q6V9R5 426 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 OR4X1Q8NH49 305 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 Q96MF0 132 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 NPFFR1Q9GZQ6 430 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 SLC25A22Q9H936 323 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 VAX2Q9UIW0 290 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 HIGD1AQ9Y241 93 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 TRAV3A0A0B4J244 114 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 FAM74A3Q4VXF1 159 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 FAM53AQ6NSI3 398 aaPredicted RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms