RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SPCS3P61009 180 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 IGF2-ASQ6U949 168 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 Q6ZWC4 215 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 ATOH7Q8N100 152 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 OR10G8Q8NGN5 311 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 ACY3Q96HD9 319 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 TRAV34A0A0B4J273 112 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 GCGP01275 180 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 MGST1P10620 155 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 CFHR2P36980 270 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 MRPL54Q6P161 138 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 TP53TG3Q9ULZ0 132 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 TCF19Q9Y242 345 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 A0A0G2JNJ9 132 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 KBTBD11-OT1A0A1B0GTJ5 212 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 SNURFLB1AK76 121 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 MKRN2OSH3BPM6 223 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 GFRA3O60609 400 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 CGB3P0DN86 165 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 CGB7P0DN87 165 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 PMCHP20382 165 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 CRYBB3P26998 211 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 SSTP61278 116 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 TCTEX1D1Q8N7M0 179 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 OR1L6Q8NGR2 347 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 MRPL18Q9H0U6 180 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 Q9UFV3 132 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 SRP14P37108 136 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 PRR30Q53SZ7 412 aaPredicted RBP13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 ARSJQ5FYB0 599 aaPredicted RBP13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 STUMQ69YW2 141 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 STPG3Q8N7X2 389 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 FAM57AQ8TBR7 257 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 RNASEH2CQ8TDP1 164 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 TP53TG5Q9Y2B4 290 aa13.53□□□□□ -0.24
CCDC88B-210ENST00000494566 IGF2RP11717 2491 aa13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 TRGV10A0A0A0MS01 117 aa13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 IL6RP08887 468 aaPredicted RBP13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 VDAC2P45880 294 aaPredicted RBP13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 SELENOVP59797 346 aa13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 MRPS11P82912 194 aaKnown RBP13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 VWC2Q2TAL6 325 aa13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 OR4A47Q6IF82 309 aa13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 DDB2Q92466 427 aa13.52□□□□□ -0.24
CCDC88B-210ENST00000494566 OR7C2O60412 319 aa13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 IGKV1-16P04430 117 aa13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 CEACAM8P31997 349 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 NUTF2P61970 127 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 PRB3Q04118 309 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 PSG5Q15238 335 aa13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 LINC00479Q96M42 142 aa13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 C2orf88Q9BSF0 95 aa13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 SFXN3Q9BWM7 321 aa13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 SSBP3Q9BWW4 388 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-210ENST00000494566 APELAP0DMC3 54 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 CRISP2P16562 243 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 CR1LQ2VPA4 569 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 C1orf174Q8IYL3 243 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 C1orf159Q96HA4 380 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 NOL4LQ96MY1 436 aaPredicted RBP13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 CRYABP02511 175 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 PQLC2Q6ZP29 291 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 FAM19A2Q8N3H0 131 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 CACNA1BQ00975 2339 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 ABCA4P78363 2273 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 PTPRQQ9UMZ3 2332 aa13.51□□□□□ -0.25
CCDC88B-210ENST00000494566 ATRXP46100 2492 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 PDE6DO43924 150 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 CA2P00918 260 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 CCL3L1P16619 93 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 GCHFRP30047 84 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 REG1BP48304 166 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 LINC00310P59036 64 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 EFNB3Q15768 340 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 IL19Q9UHD0 177 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 DPRXA6NFQ7 191 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 PLAUP00749 431 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 IRF2P14316 349 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 OR4S2Q8NH73 311 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 ZCCHC14Q8WYQ9 949 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 NTF3P20783 257 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 BSPH1Q075Z2 132 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 UHRF2Q96PU4 802 aa13.5□□□□□ -0.25
CCDC88B-210ENST00000494566 SRRM4A7MD48 611 aaKnown RBP13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 C21orf62-AS1Q17RA5 79 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 COA6Q5JTJ3 125 aaKnown RBP13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 ST6GALNAC3Q8NDV1 305 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 OR10W1Q8NGF6 305 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 BTF3L4Q96K17 158 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 KCNIP2Q9NS61 270 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 TRAV5A0A0B4J249 113 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 PRSS46E5RG02 174 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 FCN3O75636 299 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 VENTXO95231 258 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 PDLIM4P50479 330 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 TMEM144Q7Z5S9 345 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 FAM222BQ8WU58 562 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 WNT10AQ9GZT5 417 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 NAT8BQ9UHF3 227 aa13.49□□□□□ -0.25
CCDC88B-210ENST00000494566 C15orf61A6NNL5 157 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms