RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	HIST2H2BD	Q6DRA6	164 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	CTRB2	Q6GPI1	263 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	GSG1L	Q6UXU4	331 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	OR10C1	Q96KK4	312 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	CITED2	Q99967	270 aa	Predicted RBP	11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	KLK15	Q9H2R5	256 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	HEYL	Q9NQ87	328 aa	Predicted RBP	11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	STAB1	Q9NY15	2570 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	FAM90A26	D6RGX4	464 aa		11.36	□□□□□ -0.59
BRCA1-223	ENST00000494123	SCGB1D2	O95969	90 aa		11.36	□□□□□ -0.59
BRCA1-223	ENST00000494123	C19orf35	Q6ZS72	473 aa		11.36	□□□□□ -0.59
BRCA1-223	ENST00000494123	RNF152	Q8N8N0	203 aa		11.36	□□□□□ -0.59
BRCA1-223	ENST00000494123	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	11.36	□□□□□ -0.59
BRCA1-223	ENST00000494123	HIPK2	Q9H2X6	1198 aa		11.36	□□□□□ -0.59
BRCA1-223	ENST00000494123	RBKS	Q9H477	322 aa		11.36	□□□□□ -0.59
BRCA1-223	ENST00000494123	TSSC4	Q9Y5U2	329 aa	Predicted RBP	11.36	□□□□□ -0.59
BRCA1-223	ENST00000494123		A0A1W2PRX2	142 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	MED6	O75586	246 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	HIST1H1B	P16401	226 aa	Known RBP	11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	NKX2-1	P43699	371 aa	Predicted RBP	11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	OR2C3	Q8N628	320 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	OR1L6	Q8NGR2	347 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	DTD1	Q8TEA8	209 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	ZFP57	Q9NU63	452 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	F11R	Q9Y624	299 aa	Known RBP	11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	NUDT19	A8MXV4	375 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	INS-IGF2	F8WCM5	200 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	WRB	O00258	174 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	BRI3	O95415	125 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	SUB1	P53999	127 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	RHOG	P84095	191 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	C2orf68	Q2NKX9	166 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	NSUN5P1	Q3KNT7	163 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	SLC25A24	Q6NUK1	477 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	NDUFA11	Q86Y39	141 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	OR4D5	Q8NGN0	318 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	C2orf50	Q96LR7	162 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	MAGT1	Q9H0U3	335 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	MED28	Q9H204	178 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123	THYN1	Q9P016	225 aa		11.35	□□□□□ -0.59
BRCA1-223	ENST00000494123		A0A0G2JLM5	398 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	OR2J3	O76001	311 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	RPL23A	P62750	156 aa	Known RBP	11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	DEFA5	Q01523	94 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	ZNF491	Q8N8L2	437 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	ZNF114	Q8NC26	417 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	NECAP1	Q8NC96	275 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	OR1P1	Q8NH06	330 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	SPATA3	Q8NHX4	192 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	UBE2E2	Q96LR5	201 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	P2RX4	Q99571	388 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	MGAT4C	Q9UBM8	478 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	FBXL7	Q9UJT9	491 aa		11.34	□□□□□ -0.59
BRCA1-223	ENST00000494123	IGLV11-55	A0A075B6I3	123 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	FAM223B	A6NKX1	122 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	SYNGR2	O43760	224 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	SIX6	O95475	246 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	HTR2B	P41595	481 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	ID3	Q02535	119 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	FAM223A	Q8IWN6	122 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	KLHL30-AS1	Q8NEE0	82 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	MYOZ3	Q8TDC0	251 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	USMG5	Q96IX5	58 aa		11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	CIB3	Q96Q77	187 aa	Predicted RBP	11.33	□□□□□ -0.6
BRCA1-223	ENST00000494123	TRBV9	A0A0B4J1U6	114 aa		11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	IFNA10	P01566	189 aa		11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	IGHV3-11	P01762	117 aa		11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	IAPP	P10997	89 aa		11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	CDX1	P47902	265 aa	Predicted RBP	11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	POLR2G	P62487	172 aa	Known RBP eCLIP	11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	ATP5G2	Q06055	141 aa		11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	SLC24A4	Q8NFF2	622 aa		11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	FANCD2OS	Q96PS1	177 aa		11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	OR5B12	Q96R08	314 aa		11.32	□□□□□ -0.6
BRCA1-223	ENST00000494123	SSSCA1	O60232	199 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	CYCS	P99999	105 aa	Known RBP	11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	C15orf32	Q32M92	178 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	MISP3	Q96FF7	219 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	LSM5	Q9Y4Y9	91 aa	Known RBP	11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123		U3KQ87	197 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	NDUFB8	O95169	186 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	LY86	O95711	162 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	MBP	P02686	304 aa	Predicted RBP	11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	RNASE2	P10153	161 aa	Known RBP	11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	NPY1R	P25929	384 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	MFAP2	P55001	183 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	S100A10	P60903	97 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	KIAA0141	Q14154	515 aa	Predicted RBP	11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	C11orf87	Q6NUJ2	197 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	C18orf65	Q6ZTR6	163 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	NOXA1	Q86UR1	476 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	C4orf3	Q8WVX3	66 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	PINX1	Q96BK5	328 aa	Known RBP	11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	GNB4	Q9HAV0	340 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	DMRT1	Q9Y5R6	373 aa		11.31	□□□□□ -0.6
BRCA1-223	ENST00000494123	ADARB2-AS1	A8MUL3	147 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123		M0QZ24	198 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	CORT	O00230	105 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	LGALS1	P09382	135 aa	Known RBP	11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	H2BFS	P57053	126 aa		11.3	□□□□□ -0.6

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