RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 MFFQ9GZY8 342 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 VCX3AQ9NNX9 186 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 F11RQ9Y624 299 aaKnown RBP8.64□□□□□ -1.03
COL6A3-213ENST00000493475 DNAH1Q9P2D7 4330 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 IGHV3-35A0A0C4DH35 117 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 A0A0J9YWU9 116 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 A0A1B0GW64 132 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 C15orf62A8K5M9 175 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 YIF1AO95070 293 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 RLN1P04808 185 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 EDN2P20800 178 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 BRWD1-AS2P59051 145 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 TMEM69Q5SWH9 247 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 ZNF773Q6PK81 442 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 CEMP1Q6PRD7 247 aaPredicted RBP8.63□□□□□ -1.03
COL6A3-213ENST00000493475 OR6F1Q8NGZ6 308 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 GINS3Q9BRX5 216 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 OR51B2Q9Y5P1 312 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 SELENOKQ9Y6D0 94 aa8.63□□□□□ -1.03
COL6A3-213ENST00000493475 EPPK1P58107 5090 aaKnown RBP8.62□□□□□ -1.03
COL6A3-213ENST00000493475 TEX50A0A1B0GTY4 177 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 SMIM31A0A1B0GVY4 71 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 GPR31O00270 319 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 XRCC3O43542 346 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 KRASP01116 189 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 TSPAN5P62079 268 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 UBE2NLQ5JXB2 153 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 OR10W1Q8NGF6 305 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 OR1P1Q8NH06 330 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 OR4A16Q8NH70 328 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 GATAD1Q8WUU5 269 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 RNF183Q96D59 192 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 DGCR14Q96DF8 476 aaKnown RBP8.62□□□□□ -1.03
COL6A3-213ENST00000493475 TXN2Q99757 166 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 ZNF2Q9BSG1 426 aaPredicted RBP8.62□□□□□ -1.03
COL6A3-213ENST00000493475 UBQLN2Q9UHD9 624 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 BIRC6Q9NR09 4857 aa8.62□□□□□ -1.03
COL6A3-213ENST00000493475 CGB1A6NKQ9 187 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 MPTX1A8MV57 137 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 PGLYRP1O75594 196 aaPredicted RBP8.61□□□□□ -1.03
COL6A3-213ENST00000493475 ATG12O94817 140 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 IFNA4P05014 189 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 RPA2P15927 270 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 GNRHRP30968 328 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 LPAR6P43657 344 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 MFAP4P55083 255 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 WT1-ASQ06250 92 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 DHRS11Q6UWP2 260 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 TMEM116Q8NCL8 245 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 SCARB1Q8WTV0 552 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 MOB3AQ96BX8 217 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 SLC25A38Q96DW6 304 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 TMEM231Q9H6L2 316 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 NDUFA4L2Q9NRX3 87 aa8.61□□□□□ -1.03
COL6A3-213ENST00000493475 FAM212BQ9NTI7 297 aaPredicted RBP8.61□□□□□ -1.03
COL6A3-213ENST00000493475 TRAV3A0A0B4J244 114 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 GNG7O60262 68 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 FCER2P06734 321 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 PTHLHP12272 177 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 RPL35AP18077 110 aaKnown RBP8.6□□□□□ -1.03
COL6A3-213ENST00000493475 PRSS3P35030 304 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 ADMP35318 185 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 ERHP84090 104 aaKnown RBP8.6□□□□□ -1.03
COL6A3-213ENST00000493475 H2BFWTQ7Z2G1 175 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 OR5H6Q8NGV6 325 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 MISP3Q96FF7 219 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 NARS2Q96I59 477 aaKnown RBP8.6□□□□□ -1.03
COL6A3-213ENST00000493475 PDCD10Q9BUL8 212 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 CSTL1Q9H114 145 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 MAP6D1Q9H9H5 199 aa8.6□□□□□ -1.03
COL6A3-213ENST00000493475 TRAV14DV4A0A0A6YYC5 116 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 MEIS3P1A6NDR6 274 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 C15orf61A6NNL5 157 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 DNASE2O00115 360 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-213ENST00000493475 PMP2P02689 132 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 CTSDP07339 412 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-213ENST00000493475 G6PCP35575 357 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 NPBWR1P48145 328 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 RFX2P48378 723 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 NEDD8Q15843 81 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 SAMD12Q8N8I0 201 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 FCAMRQ8WWV6 532 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 SLC25A46Q96AG3 418 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 RHPN1-AS1Q9BWJ2 59 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 SMPXQ9UHP9 88 aa8.59□□□□□ -1.03
COL6A3-213ENST00000493475 IGHV3-21A0A0B4J1V1 117 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 IGHV7-4-1A0A0J9YVY3 117 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 CORTO00230 105 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 CLEC2LP0C7M8 214 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 FCGR2BP31994 310 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-213ENST00000493475 SNCAP37840 140 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 EIF2B2P49770 351 aaKnown RBP8.58□□□□□ -1.04
COL6A3-213ENST00000493475 SUB1P53999 127 aaKnown RBP eCLIP8.58□□□□□ -1.04
COL6A3-213ENST00000493475 TCTAP57738 103 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 TAS2R20P59543 309 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 RBMS2Q15434 407 aaKnown RBP8.58□□□□□ -1.04
COL6A3-213ENST00000493475 ODF3L2Q3SX64 289 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 DUSP18Q8NEJ0 188 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 PHLDA1Q8WV24 401 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-213ENST00000493475 RARRES2Q99969 163 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms