RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 ZNF80P51504 273 aaPredicted RBP0.7□□□□□ -2.3
SCN1A-206ENST00000491429 CCL20P78556 96 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 PMAIP1Q13794 54 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 CDKL4Q5MAI5 379 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.7□□□□□ -2.3
SCN1A-206ENST00000491429 LINC00471Q8N535 108 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 MCFD2Q8NI22 146 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 AQP3Q92482 292 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 DERL1Q9BUN8 251 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 OR5AC2Q9NZP5 309 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 LSM5Q9Y4Y9 91 aaKnown RBP0.7□□□□□ -2.3
SCN1A-206ENST00000491429 DCCP43146 1447 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 IGKV1D-42A0A075B6H8 117 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 TGIF2-C20orf24A0A0A6YYL0 155 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 EEF1E1-BLOC1S5C9J1V9 151 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 GEMIN2O14893 280 aaKnown RBP0.69□□□□□ -2.3
SCN1A-206ENST00000491429 TGOLN2O43493 480 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 CALB1P05937 261 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 RNASE3P12724 160 aaKnown RBP0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST1H2BOP23527 126 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 FKBP2P26885 142 aaKnown RBP0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST1H2BBP33778 126 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST1H2BDP58876 126 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 RAB5BP61020 215 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST1H2BCP62807 126 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 IFITM2Q01629 132 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST2H2BEQ16778 126 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.69□□□□□ -2.3
SCN1A-206ENST00000491429 LPCAT4Q643R3 524 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 C8orf74Q6P047 294 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 ALKAL1Q6UXT8 129 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 Q6ZS49 121 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 IQCF2Q8IXL9 164 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 C12orf29Q8N999 325 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 RASSF5Q8WWW0 418 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST1H2BHQ93079 126 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 PTH2Q96A98 100 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST1H2BNQ99877 126 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 HIST1H2BMQ99879 126 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 GINS4Q9BRT9 223 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 TRABDQ9H4I3 376 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 C9orf84Q5VXU9 1444 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 GREB1Q4ZG55 1949 aa0.69□□□□□ -2.3
SCN1A-206ENST00000491429 MYOFQ9NZM1 2061 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 DCTN3O75935 186 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 OR5F1O95221 314 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 SHBGP04278 402 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 CRYGAP11844 174 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 UBE2IP63279 158 aaKnown RBP0.68□□□□□ -2.3
SCN1A-206ENST00000491429 HBA1P69905 142 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 STX5Q13190 355 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 TEX36Q5VZQ5 186 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 CLVS1Q8IUQ0 354 aaPredicted RBP0.68□□□□□ -2.3
SCN1A-206ENST00000491429 MRPL30Q8TCC3 161 aaKnown RBP0.68□□□□□ -2.3
SCN1A-206ENST00000491429 MRPS26Q9BYN8 205 aaKnown RBP0.68□□□□□ -2.3
SCN1A-206ENST00000491429 TP73-AS1Q9UF72 201 aa0.68□□□□□ -2.3
SCN1A-206ENST00000491429 PCDH15Q96QU1 1955 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 IGKV1-9A0A0C4DH69 117 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 FUOMA2VDF0 154 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 FADS1O60427 444 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 IGKV1-5P01602 117 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 HTR1AP08908 422 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 SPI1P17947 270 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 DEFA1P59665 94 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 DEFB115Q30KQ5 88 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 SPANXN3Q5MJ09 141 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 RPL22L1Q6P5R6 122 aaKnown RBP0.67□□□□□ -2.3
SCN1A-206ENST00000491429 Q6ZQT0 140 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 FAM19A2Q8N3H0 131 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 DNAJC9Q8WXX5 260 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 SLC35B4Q969S0 331 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 OPTNQ96CV9 577 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 SCGB3A1Q96QR1 104 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 SLC50A1Q9BRV3 221 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 CKLFQ9UBR5 152 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 PKIGQ9Y2B9 76 aa0.67□□□□□ -2.3
SCN1A-206ENST00000491429 KCNK1O00180 336 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 HLA-DRB1P01911 266 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 OR5G3P0C626 314 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 PRB4P10163 310 aaPredicted RBP0.66□□□□□ -2.3
SCN1A-206ENST00000491429 BRS3P32247 399 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 SPCS3P61009 180 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 DPPA3Q6W0C5 159 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 TMEM86BQ8N661 226 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 OR4C6Q8NH72 309 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 PFN4Q8NHR9 129 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 PPP1R2P1Q96PQ5 205 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 C11orf68Q9H3H3 251 aaKnown RBP0.66□□□□□ -2.3
SCN1A-206ENST00000491429 GUCA1BQ9UMX6 200 aa0.66□□□□□ -2.3
SCN1A-206ENST00000491429 DIDO1Q9BTC0 2240 aaKnown RBP0.65□□□□□ -2.3
SCN1A-206ENST00000491429 UNC79Q9P2D8 2635 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 TRBV6-7A0A0A0MS04 114 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 PSMD12O00232 456 aaPredicted RBP0.65□□□□□ -2.31
SCN1A-206ENST00000491429 IFNA5P01569 189 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 CTSDP07339 412 aaPredicted RBP0.65□□□□□ -2.31
SCN1A-206ENST00000491429 ASAH2BP0C7U1 165 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 HIST1H1EP10412 219 aaKnown RBP0.65□□□□□ -2.31
SCN1A-206ENST00000491429 ZNF93P35789 620 aaPredicted RBP0.65□□□□□ -2.31
SCN1A-206ENST00000491429 KCNJ8Q15842 424 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 ZNF826PQ6ZT77 177 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms