RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 DCTN2Q13561 401 aaKnown RBP11.33□□□□□ -0.6
USP4-212ENST00000486549 TMEM187Q14656 261 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 RPEL1Q2QD12 228 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 SLC25A24Q6NUK1 477 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 EEF1AKMT3Q96AZ1 226 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 PDCD10Q9BUL8 212 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 PLEKHA3Q9HB20 300 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 DMRT1Q9Y5R6 373 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.32□□□□□ -0.6
USP4-212ENST00000486549 NAP1L6A6NFF2 107 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 BMPR1BO00238 502 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 ST8SIA3O43173 380 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 IFNA17P01571 189 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 SYNJ2BPP57105 145 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 SUPT4H1P63272 117 aaKnown RBP11.32□□□□□ -0.6
USP4-212ENST00000486549 EGFEM1PQ0D2K5 195 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 CLEC19AQ6UXS0 136 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 ZNF429Q86V71 674 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 SLC35G3Q8N808 338 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 GALNT14Q96FL9 552 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 CCDC140Q96MF4 163 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 SLC25A21Q9BQT8 299 aaPredicted RBP11.32□□□□□ -0.6
USP4-212ENST00000486549 THYN1Q9P016 225 aa11.32□□□□□ -0.6
USP4-212ENST00000486549 F11RQ9Y624 299 aaKnown RBP11.32□□□□□ -0.6
USP4-212ENST00000486549 IGHV3-21A0A0B4J1V1 117 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 HLA-AP01891 365 aaKnown RBP11.31□□□□□ -0.6
USP4-212ENST00000486549 ANXA3P12429 323 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 VAMP1P23763 118 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 HOXA1P49639 335 aaPredicted RBP11.31□□□□□ -0.6
USP4-212ENST00000486549 MFAP2P55001 183 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 RBMS2Q15434 407 aaKnown RBP11.31□□□□□ -0.6
USP4-212ENST00000486549 KLK9Q2XQG4 91 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 Q6ZRM9 215 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 FAM219AQ8IW50 185 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 GPR146Q96CH1 333 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 CXorf58Q96LI9 332 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 ZC4H2Q9NQZ6 224 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 CACNG5Q9UF02 275 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 KLK9Q9UKQ9 250 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 TMEM56-RWDD3S4R434 201 aa11.31□□□□□ -0.6
USP4-212ENST00000486549 CENPXA8MT69 81 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 ARL3P36405 182 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 KLF5Q13887 457 aaPredicted RBP11.3□□□□□ -0.6
USP4-212ENST00000486549 TMEM128Q5BJH2 165 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 ACSM6Q6P461 480 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 CENPSQ8N2Z9 138 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 OR2C3Q8N628 320 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 IL22RA2Q969J5 263 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 OR4C12Q96R67 309 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 ELOVL1Q9BW60 279 aa11.3□□□□□ -0.6
USP4-212ENST00000486549 TRBV7-1A0A0A6YYK4 115 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 WI2-2373I1.2A0A1W2PRP0 233 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 NXPH3O95157 252 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 GPR183P32249 361 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 INSL3P51460 131 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 ERHP84090 104 aaKnown RBP11.29□□□□□ -0.6
USP4-212ENST00000486549 PPP1R1AQ13522 171 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 TATDN3Q17R31 274 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 FAM209BQ5JX69 171 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 LYZL2Q7Z4W2 148 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 HAPLN4Q86UW8 402 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 LGI3Q8N145 548 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 OR9G4Q8NGQ1 327 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 OR1P1Q8NH06 330 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 MISP3Q96FF7 219 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 C7orf50Q9BRJ6 194 aaKnown RBP11.29□□□□□ -0.6
USP4-212ENST00000486549 ENY2Q9NPA8 101 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.29□□□□□ -0.6
USP4-212ENST00000486549 PTTG2Q9NZH5 202 aa11.29□□□□□ -0.6
USP4-212ENST00000486549 PRKDCP78527 4128 aaKnown RBP11.28□□□□□ -0.6
USP4-212ENST00000486549 GGCTO75223 188 aaKnown RBP11.28□□□□□ -0.6
USP4-212ENST00000486549 NDUFB6O95139 128 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 OR2C1O95371 312 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 CLEC3BP05452 202 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 BTCP35070 178 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 SNCAP37840 140 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 SRPXP78539 464 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 OR1L6Q8NGR2 347 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 ZNF502Q8TBZ5 544 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 S100ZQ8WXG8 99 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 PRR25Q96S07 402 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 BATF3Q9NR55 127 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 FLVCR2Q9UPI3 526 aa11.28□□□□□ -0.6
USP4-212ENST00000486549 A0A0B4J2A0 478 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 K7EIL1 84 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 SFT2D2O95562 160 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 LY86O95711 162 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 SULT1A3P0DMM9 295 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 SULT1A4P0DMN0 295 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 ANKRD55Q3KP44 614 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 LINC00299Q6ZSB3 139 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 UBAC2Q8NBM4 344 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 ZNF114Q8NC26 417 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 VN1R17PQ8TDU5 208 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 PINX1Q96BK5 328 aaKnown RBP11.27□□□□□ -0.61
USP4-212ENST00000486549 CCDC32Q9BV29 185 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 C21orf62Q9NYP8 219 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 SHPKQ9UHJ6 478 aa11.27□□□□□ -0.61
USP4-212ENST00000486549 OR2T8A6NH00 312 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 CEBPZOSA8MTT3 80 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms