RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 IFNA21P01568 189 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 ETV6P41212 452 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 INSL3P51460 131 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 CFHR3Q02985 330 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 ZNF846Q147U1 533 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 CNPY1Q3B7I2 92 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 FAM106AQ4KMX7 169 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 CCDC190Q86UF4 302 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 NOXA1Q86UR1 476 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 LHFPL1Q86WI0 220 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 RNF152Q8N8N0 203 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 COQ8AQ8NI60 647 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 TP53RKQ96S44 253 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 C7orf50Q9BRJ6 194 aaKnown RBP6.25□□□□□ -1.41
USP40-216ENST00000485943 SRRQ9GZT4 340 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 TMEM222Q9H0R3 208 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 GAR1Q9NY12 217 aaKnown RBP6.25□□□□□ -1.41
USP40-216ENST00000485943 SLC2A8Q9NY64 477 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 PLA2G2DQ9UNK4 145 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 V9GYH0 126 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 IGHV4OR15-8A0A075B7B6 117 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 A0A087WW49 117 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 TRBV7-1A0A0A6YYK4 115 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 TEX50A0A1B0GTY4 177 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 CRYM-AS1A6NIL9 109 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 CORTO00230 105 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 IGHV3-23P01764 117 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 ZNF735P0CB33 412 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 SULT1A3P0DMM9 295 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 SULT1A4P0DMN0 295 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 EGR2P11161 476 aaPredicted RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 AREGP15514 252 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 ARL3P36405 182 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 SLURP1P55000 103 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 DEFA1P59665 94 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 DEFA3P59666 94 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 HSPE1P61604 102 aaKnown RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 RPP30P78346 268 aaKnown RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 DEFA5Q01523 94 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 EIF4EBP1Q13541 118 aaPredicted RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 POU2AF1Q16633 256 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 TMEM128Q5BJH2 165 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 PLET1Q6UQ28 207 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 CLEC19AQ6UXS0 136 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 ETV3LQ6ZN32 361 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 ZNF429Q86V71 674 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 LINC00482Q8N8I6 264 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 UXS1Q8NBZ7 420 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 ADAD2Q8NCV1 583 aaKnown RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 ENKURQ8TC29 256 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 MRAPQ8TCY5 172 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 WIPF2Q8TF74 440 aaPredicted RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 DCUN1D4Q92564 292 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 CCDC32Q9BV29 185 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 ALX4Q9H161 411 aaPredicted RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 AKIP1Q9NQ31 210 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 HEYLQ9NQ87 328 aaPredicted RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.24□□□□□ -1.41
USP40-216ENST00000485943 PTTG2Q9NZH5 202 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 GPR132Q9UNW8 380 aa6.24□□□□□ -1.41
USP40-216ENST00000485943 TENM1Q9UKZ4 2725 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 TRAV3A0A0B4J244 114 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 FAM240BA0A1B0GVZ2 78 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 RPS10-NUDT3A0A1W2PQS6 291 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 NUPL2O15504 423 aaKnown RBP6.23□□□□□ -1.41
USP40-216ENST00000485943 SOX15O60248 233 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 GNG7O60262 68 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 GGCTO75223 188 aaKnown RBP6.23□□□□□ -1.41
USP40-216ENST00000485943 MED6O75586 246 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 YIF1AO95070 293 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 NXPH3O95157 252 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 IFNA10P01566 189 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 HLA-AP01891 365 aaKnown RBP6.23□□□□□ -1.41
USP40-216ENST00000485943 IL6RP08887 468 aaPredicted RBP6.23□□□□□ -1.41
USP40-216ENST00000485943 IL7P13232 177 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 MYOD1P15172 320 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 UCP1P25874 307 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 HOXD3P31249 432 aaPredicted RBP6.23□□□□□ -1.41
USP40-216ENST00000485943 BMI1P35226 326 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 OPRK1P41145 380 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 RUNX1Q01196 453 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 KLF9Q13886 244 aaPredicted RBP6.23□□□□□ -1.41
USP40-216ENST00000485943 ZNF79Q15937 498 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 ZNF585BQ52M93 769 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 SPINK9Q5DT21 86 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 ACSM6Q6P461 480 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 OR10W1Q8NGF6 305 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 NARS2Q96I59 477 aaKnown RBP6.23□□□□□ -1.41
USP40-216ENST00000485943 SEC22AQ96IW7 307 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 C5orf66Q9H5L9 145 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 CACNG5Q9UF02 275 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 S4R3C0 116 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 TNCP24821 2201 aa6.23□□□□□ -1.41
USP40-216ENST00000485943 DUXBA0A1W2PPF3 345 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 TEX22C9J3V5 150 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 I3L521 148 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 ST8SIA3O43173 380 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 LYRM1O43325 122 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 CTRB1P17538 263 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 GPR183P32249 361 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms