RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 REG1AP05451 166 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 ANXA3P12429 323 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 DEFA4P12838 97 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 HOXD3P31249 432 aaPredicted RBP12.21□□□□□ -0.45
UPF3A-208ENST00000484246 SLURP1P55000 103 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 IZUMO4Q1ZYL8 232 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 C9orf66Q5T8R8 295 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 TMEM268Q5VZI3 342 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 OR2C3Q8N628 320 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 DCUN1D4Q92564 292 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 DLX4Q92988 240 aaPredicted RBP12.21□□□□□ -0.45
UPF3A-208ENST00000484246 CXorf58Q96LI9 332 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 THYN1Q9P016 225 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 CACFD1Q9UGQ2 172 aa12.21□□□□□ -0.45
UPF3A-208ENST00000484246 NOTCH1P46531 2555 aa12.21□□□□□ -0.46
UPF3A-208ENST00000484246 A0A0B4J2A0 478 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 DUXBA0A1W2PPF3 345 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 CENPXA8MT69 81 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 OVOL1O14753 267 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 ST8SIA3O43173 380 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 NDUFB8O95169 186 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 TRBV12-3P01733 135 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 AKR1C4P17516 323 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 INSL3P51460 131 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 DEFA6Q01524 100 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 REC114Q7Z4M0 266 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 TMED4Q7Z7H5 227 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 LGI3Q8N145 548 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 LRTM2Q8N967 370 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 OR1P1Q8NH06 330 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 OR52E5Q8NH55 327 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 VN1R17PQ8TDU5 208 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 CCDC140Q96MF4 163 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 ATP6V0BQ99437 205 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 HINT2Q9BX68 163 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 SHPKQ9UHJ6 478 aa12.2□□□□□ -0.46
UPF3A-208ENST00000484246 NOTCH3Q9UM47 2321 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 TRBV7-1A0A0A6YYK4 115 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 SEC14L6B5MCN3 397 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 BMPR1BO00238 502 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 CCR6P51684 374 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 KLF5Q13887 457 aaPredicted RBP12.19□□□□□ -0.46
UPF3A-208ENST00000484246 NMSQ5H8A3 153 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 PVRIGQ6DKI7 326 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 Q6ZRM9 215 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 CENPSQ8N2Z9 138 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 SLC35G3Q8N808 338 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 RNASE11Q8TAA1 199 aaKnown RBP12.19□□□□□ -0.46
UPF3A-208ENST00000484246 EEF1AKMT3Q96AZ1 226 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 PLEKHA3Q9HB20 300 aa12.19□□□□□ -0.46
UPF3A-208ENST00000484246 ZMAT5Q9UDW3 170 aaKnown RBP12.19□□□□□ -0.46
UPF3A-208ENST00000484246 PLA2G10O15496 165 aa12.18□□□□□ -0.46
UPF3A-208ENST00000484246 MFAP2P55001 183 aa12.18□□□□□ -0.46
UPF3A-208ENST00000484246 ACSM6Q6P461 480 aa12.18□□□□□ -0.46
UPF3A-208ENST00000484246 GPR146Q96CH1 333 aa12.18□□□□□ -0.46
UPF3A-208ENST00000484246 WDR12Q9GZL7 423 aaKnown RBP12.18□□□□□ -0.46
UPF3A-208ENST00000484246 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.18□□□□□ -0.46
UPF3A-208ENST00000484246 ANKRD34BA5PLL1 514 aa12.17□□□□□ -0.46
UPF3A-208ENST00000484246 MFSD2BA6NFX1 497 aa12.17□□□□□ -0.46
UPF3A-208ENST00000484246 SFT2D2O95562 160 aa12.17□□□□□ -0.46
UPF3A-208ENST00000484246 MECP2P51608 486 aaKnown RBP12.17□□□□□ -0.46
UPF3A-208ENST00000484246 SPCS3P61009 180 aa12.17□□□□□ -0.46
UPF3A-208ENST00000484246 ERHP84090 104 aaKnown RBP12.17□□□□□ -0.46
UPF3A-208ENST00000484246 PPP1R1AQ13522 171 aa12.17□□□□□ -0.46
UPF3A-208ENST00000484246 ZNF502Q8TBZ5 544 aa12.17□□□□□ -0.46
UPF3A-208ENST00000484246 PDCD10Q9BUL8 212 aa12.17□□□□□ -0.46
UPF3A-208ENST00000484246 CACNG5Q9UF02 275 aa12.17□□□□□ -0.46
UPF3A-208ENST00000484246 K7EIM0 57 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 LYRM1O43325 122 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 IFNA17P01571 189 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 SULT1A3P0DMM9 295 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 SULT1A4P0DMN0 295 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 RPEL1Q2QD12 228 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 BSXQ3C1V8 233 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 SIGLEC8Q9NYZ4 499 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 PRR13Q9NZ81 148 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 DNAH3Q8TD57 4116 aa12.16□□□□□ -0.46
UPF3A-208ENST00000484246 LINC00854A0A1B0GVQ3 168 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 GGCTO75223 188 aaKnown RBP12.15□□□□□ -0.46
UPF3A-208ENST00000484246 HLA-AP01891 365 aaKnown RBP12.15□□□□□ -0.46
UPF3A-208ENST00000484246 SLC25A6P12236 298 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 VAMP1P23763 118 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 FCGR2BP31994 310 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-208ENST00000484246 KRTAP10-11P60412 298 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 ZNF846Q147U1 533 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 ANKRD55Q3KP44 614 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 SLC25A24Q6NUK1 477 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 LYZL2Q7Z4W2 148 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 OR9G4Q8NGQ1 327 aa12.15□□□□□ -0.46
UPF3A-208ENST00000484246 AURKAIP1Q9NWT8 199 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-208ENST00000484246 A0A1B0GU03 582 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 I3L2K1 104 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 LGALS9O00182 355 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 HOXA1P49639 335 aaPredicted RBP12.14□□□□□ -0.47
UPF3A-208ENST00000484246 SYNJ2BPP57105 145 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 SMCO1Q147U7 214 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 TATDN3Q17R31 274 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 GPHB5Q86YW7 130 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 ELOVL1Q9BW60 279 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 HSPB7Q9UBY9 170 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms