RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 MARC2Q969Z3 335 aa13.32□□□□□ -0.28
COL9A3-212ENST00000481800 BSCL2Q96G97 398 aaPredicted RBP13.32□□□□□ -0.28
COL9A3-212ENST00000481800 BCL7BQ9BQE9 202 aa13.32□□□□□ -0.28
COL9A3-212ENST00000481800 TM2D3Q9BRN9 247 aa13.32□□□□□ -0.28
COL9A3-212ENST00000481800 C21orf62Q9NYP8 219 aa13.32□□□□□ -0.28
COL9A3-212ENST00000481800 C3orf85A0A1B0GTC6 90 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 CD74P04233 296 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 MFAP2P55001 183 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 TM4SF20Q53R12 229 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 UNQ9165/PRO28630Q6UXU0 137 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 UBAC2Q8NBM4 344 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 OR4D10Q8NGI6 311 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 OR1P1Q8NH06 330 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 SCARB1Q8WTV0 552 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 WDR89Q96FK6 387 aaPredicted RBP13.31□□□□□ -0.28
COL9A3-212ENST00000481800 DIRAS2Q96HU8 199 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 PLEKHA3Q9HB20 300 aa13.31□□□□□ -0.28
COL9A3-212ENST00000481800 CCDC59Q9P031 241 aaKnown RBP13.31□□□□□ -0.28
COL9A3-212ENST00000481800 C3orf84H3BNL1 204 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 CD7P09564 240 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 RPL5P46777 297 aaKnown RBP13.3□□□□□ -0.28
COL9A3-212ENST00000481800 AKR1C2P52895 323 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 ELLP55199 621 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-212ENST00000481800 HSPE1P61604 102 aaKnown RBP13.3□□□□□ -0.28
COL9A3-212ENST00000481800 IL18Q14116 193 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 MEF2DQ14814 521 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 HAGHQ16775 308 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 TRIM16LQ309B1 348 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 Q56UQ5 140 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 SPSB3Q6PJ21 355 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 SLC16A13Q7RTY0 426 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 DYNC2LI1Q8TCX1 351 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 TP53RKQ96S44 253 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 ATP6V0BQ99437 205 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 SPATA25Q9BR10 227 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 MRPL27Q9P0M9 148 aaKnown RBP13.3□□□□□ -0.28
COL9A3-212ENST00000481800 RABL2AQ9UBK7 228 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-212ENST00000481800 RABL2BQ9UNT1 228 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 SELENOKQ9Y6D0 94 aa13.3□□□□□ -0.28
COL9A3-212ENST00000481800 DISC1C4P0D8 188 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 ERHP84090 104 aaKnown RBP13.29□□□□□ -0.28
COL9A3-212ENST00000481800 PRCDQ00LT1 54 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 BTNL8Q6UX41 500 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 RBPMS2Q6ZRY4 209 aaKnown RBP13.29□□□□□ -0.28
COL9A3-212ENST00000481800 TMEM61Q8N0U2 210 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 OR2C3Q8N628 320 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 OR13C8Q8NGS7 320 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 MARCH1Q8TCQ1 289 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 SMIM4Q8WVI0 70 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 MISP3Q96FF7 219 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 ZNF436Q9C0F3 470 aaPredicted RBP13.29□□□□□ -0.28
COL9A3-212ENST00000481800 C6orf62Q9GZU0 229 aaPredicted RBP13.29□□□□□ -0.28
COL9A3-212ENST00000481800 GAR1Q9NY12 217 aaKnown RBP13.29□□□□□ -0.28
COL9A3-212ENST00000481800 MLXQ9UH92 298 aa13.29□□□□□ -0.28
COL9A3-212ENST00000481800 OR11H12B2RN74 326 aa13.28□□□□□ -0.28
COL9A3-212ENST00000481800 K7EIM0 57 aa13.28□□□□□ -0.28
COL9A3-212ENST00000481800 SCAF4O95104 1147 aaKnown RBP13.28□□□□□ -0.28
COL9A3-212ENST00000481800 CTSDP07339 412 aaPredicted RBP13.28□□□□□ -0.28
COL9A3-212ENST00000481800 ANKRD55Q3KP44 614 aa13.28□□□□□ -0.28
COL9A3-212ENST00000481800 DEFB125Q8N687 156 aa13.28□□□□□ -0.28
COL9A3-212ENST00000481800 RNASE11Q8TAA1 199 aaKnown RBP13.28□□□□□ -0.28
COL9A3-212ENST00000481800 MUC7Q8TAX7 377 aa13.28□□□□□ -0.28
COL9A3-212ENST00000481800 TMEM190Q8WZ59 177 aa13.28□□□□□ -0.28
COL9A3-212ENST00000481800 PDCD10Q9BUL8 212 aa13.28□□□□□ -0.28
COL9A3-212ENST00000481800 C14orf166Q9Y224 244 aaKnown RBP13.28□□□□□ -0.28
COL9A3-212ENST00000481800 NDUFA4O00483 81 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 CTDSPLO15194 276 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 B3GALNT1O75752 331 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 IFNA17P01571 189 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 IGKV1-5P01602 117 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 AKAIN1P0CW23 69 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 C8orf88P0DMB2 117 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 IZUMO4Q1ZYL8 232 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 SP6Q3SY56 376 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 FAAP20Q6NZ36 180 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 SLC35G3Q8N808 338 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 OR52B4Q8NGK2 314 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 RRNAD1Q96FB5 475 aaKnown RBP13.27□□□□□ -0.29
COL9A3-212ENST00000481800 CHRDL1Q9BU40 450 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 C20orf24Q9BUV8 137 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 SRD5A3Q9H8P0 318 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 DAZ1Q9NQZ3 744 aaKnown RBP13.27□□□□□ -0.29
COL9A3-212ENST00000481800 CEPT1Q9Y6K0 416 aa13.27□□□□□ -0.29
COL9A3-212ENST00000481800 TRAV25A0A0B4J276 109 aa13.26□□□□□ -0.29
COL9A3-212ENST00000481800 TEX13DA0A0J9YY54 714 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-212ENST00000481800 NUPL2O15504 423 aaKnown RBP13.26□□□□□ -0.29
COL9A3-212ENST00000481800 SNCAP37840 140 aa13.26□□□□□ -0.29
COL9A3-212ENST00000481800 MFAP4P55083 255 aa13.26□□□□□ -0.29
COL9A3-212ENST00000481800 SPINK9Q5DT21 86 aa13.26□□□□□ -0.29
COL9A3-212ENST00000481800 ZNF114Q8NC26 417 aa13.26□□□□□ -0.29
COL9A3-212ENST00000481800 PINX1Q96BK5 328 aaKnown RBP13.26□□□□□ -0.29
COL9A3-212ENST00000481800 CITED4Q96RK1 184 aa13.26□□□□□ -0.29
COL9A3-212ENST00000481800 TENM3Q9P273 2699 aa13.26□□□□□ -0.29
COL9A3-212ENST00000481800 RSL24D1Q9UHA3 163 aaKnown RBP13.26□□□□□ -0.29
COL9A3-212ENST00000481800 H3BMQ9 156 aa13.25□□□□□ -0.29
COL9A3-212ENST00000481800 UCP1P25874 307 aa13.25□□□□□ -0.29
COL9A3-212ENST00000481800 RELQ04864 619 aaPredicted RBP13.25□□□□□ -0.29
COL9A3-212ENST00000481800 ISOC1Q96CN7 298 aa13.25□□□□□ -0.29
COL9A3-212ENST00000481800 TXN2Q99757 166 aa13.25□□□□□ -0.29
COL9A3-212ENST00000481800 WFDC10AQ9H1F0 79 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms