RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 RPS10-NUDT3A0A1W2PQS6 291 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 RNF222A6NCQ9 220 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 CGB1A6NKQ9 187 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 C15orf62A8K5M9 175 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 BOLA2-SMG1P6H3BVE0 249 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 TRIM77I1YAP6 450 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 AP4M1O00189 453 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 LCE2BO14633 110 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 NXPH3O95157 252 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 AMY1AP04745 511 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 OR13C7P0DN81 318 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 CTRB1P17538 263 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 HILS1P60008 231 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 EWSR1Q01844 656 aaKnown RBP eCLIP8.04□□□□□ -1.12
USP39-215ENST00000481409 EXOSC2Q13868 293 aaKnown RBP8.04□□□□□ -1.12
USP39-215ENST00000481409 ZNF266Q14584 549 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 LY6EQ16553 131 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 LGALSLQ3ZCW2 172 aaPredicted RBP8.04□□□□□ -1.12
USP39-215ENST00000481409 CTRB2Q6GPI1 263 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 IL17RELQ6ZVW7 336 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 SLC35E3Q7Z769 313 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 TMEM219Q86XT9 240 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 Q8N2B8 174 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 OR1S2Q8NGQ3 325 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 ABHD5Q8WTS1 349 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 CACNG8Q8WXS5 425 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 ARPC5LQ9BPX5 153 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 PARD6GQ9BYG4 376 aaPredicted RBP8.04□□□□□ -1.12
USP39-215ENST00000481409 SOX21Q9Y651 276 aaPredicted RBP8.04□□□□□ -1.12
USP39-215ENST00000481409 TNCP24821 2201 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 MAP1AP78559 2803 aaPredicted RBP8.04□□□□□ -1.12
USP39-215ENST00000481409 AKAP9Q99996 3911 aa8.04□□□□□ -1.12
USP39-215ENST00000481409 CSMD1Q96PZ7 3565 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 BORCS7-ASMTA0A0B4J1R7 106 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 TMEM89A2RUT3 159 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 FAM24AA6NFZ4 105 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 E7EUB6 86 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 BCL2L11O43521 198 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 CRLF1O75462 422 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 JTBO76095 146 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 OPN1MWP04001 364 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 RNASE1P07998 156 aaKnown RBP8.03□□□□□ -1.12
USP39-215ENST00000481409 OPN1MW2P0DN77 364 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 OPN1MW3P0DN78 364 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 RNASE2P10153 161 aaKnown RBP8.03□□□□□ -1.12
USP39-215ENST00000481409 CXCL2P19875 107 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 GPX4P36969 197 aaPredicted RBP8.03□□□□□ -1.12
USP39-215ENST00000481409 DLK1P80370 383 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 WT1-ASQ06250 92 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 FBLN7Q53RD9 439 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 C10orf55Q5SWW7 151 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 ETV3LQ6ZN32 361 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 TMUB2Q71RG4 321 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 GRPEL2Q8TAA5 225 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 FAM110DQ8TAY7 271 aaPredicted RBP8.03□□□□□ -1.12
USP39-215ENST00000481409 SMR3AQ99954 134 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 ARL6Q9H0F7 186 aa8.03□□□□□ -1.12
USP39-215ENST00000481409 F11RQ9Y624 299 aaKnown RBP8.03□□□□□ -1.12
USP39-215ENST00000481409 OTOGQ6ZRI0 2925 aa8.02□□□□□ -1.12
USP39-215ENST00000481409 A0A1B0GW64 132 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 IGSF23A1L1A6 192 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 PMS2P5A8MQ11 134 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 ATP6V0E1O15342 81 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 SOX15O60248 233 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 MPDU1O75352 247 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 FBXO24O75426 580 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 IFNA4P05014 189 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 EGR2P11161 476 aaPredicted RBP8.02□□□□□ -1.13
USP39-215ENST00000481409 MYOD1P15172 320 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 FAM209BQ5JX69 171 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 LAMTOR1Q6IAA8 161 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 SLC51BQ86UW2 128 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 OR10W1Q8NGF6 305 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 OR4C12Q96R67 309 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 ATP6V0BQ99437 205 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 P2RX4Q99571 388 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 ATP5SQ99766 215 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 HSPB9Q9BQS6 159 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 PARP11Q9NR21 331 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 HIVEP2P31629 2446 aa8.02□□□□□ -1.13
USP39-215ENST00000481409 FLNBO75369 2602 aaKnown RBP8.01□□□□□ -1.13
USP39-215ENST00000481409 ZANQ9Y493 2812 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 ZNF469Q96JG9 3925 aaPredicted RBP8.01□□□□□ -1.13
USP39-215ENST00000481409 TRAV41A0A0B4J266 112 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 DNAJC9-AS1A6NH13 148 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 INAFM1C9JVW0 142 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 PRSS46E5RG02 174 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 H3BP45 60 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 IFNA5P01569 189 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 CRYBA1P05813 215 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 METTL15P1P0C7V9 234 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 DEFA4P12838 97 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 AREGP15514 252 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 NDPQ00604 133 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 NHLH2Q02577 135 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 SLC38A11Q08AI6 406 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 OPCMLQ14982 345 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 VWC2Q2TAL6 325 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 C19orf54Q5BKX5 351 aa8.01□□□□□ -1.13
USP39-215ENST00000481409 SPINK9Q5DT21 86 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms