RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 GALNT14Q96FL9 552 aa4.16□□□□□ -1.74
CCDC39-204ENST00000476379 POM121L2Q96KW2 1035 aa4.16□□□□□ -1.74
CCDC39-204ENST00000476379 HES4Q9HCC6 221 aa4.16□□□□□ -1.74
CCDC39-204ENST00000476379 A0A1B0GU03 582 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 HELTA6NFD8 242 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 SERF1AO75920 110 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 HOXA5P20719 270 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 USF1P22415 310 aaPredicted RBP4.15□□□□□ -1.74
CCDC39-204ENST00000476379 IL3RAP26951 378 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 H1FOOQ8IZA3 346 aaPredicted RBP4.15□□□□□ -1.74
CCDC39-204ENST00000476379 C9orf106Q8NAJ2 232 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 SLC35E1Q96K37 410 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 TAAR6Q96RI8 345 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 MRPL18Q9H0U6 180 aaKnown RBP4.15□□□□□ -1.74
CCDC39-204ENST00000476379 ZNF586Q9NXT0 402 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 ONECUT1Q9UBC0 465 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 FLNAP21333 2647 aaKnown RBP4.15□□□□□ -1.74
CCDC39-204ENST00000476379 LRRC30A6NM36 301 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 CA2P00918 260 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 ADMP35318 185 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 HIST3H3Q16695 136 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 HLA-DRB5Q30154 266 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 HIST3H2BBQ8N257 126 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 PITPNC1Q9UKF7 332 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 MPC1Q9Y5U8 109 aa4.15□□□□□ -1.74
CCDC39-204ENST00000476379 TRBV6-7A0A0A0MS04 114 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 TRAV8-1A0A0A6YYK1 113 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 PQLC2LA1A4F0 135 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 DIRC3C9JPN6 131 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 UBE2CO00762 179 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 SMPD2O60906 423 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 HRASP01112 189 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 PAX9P55771 341 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 KLF3P57682 345 aaPredicted RBP4.15□□□□□ -1.75
CCDC39-204ENST00000476379 RELBQ01201 579 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 IGFL4Q6B9Z1 124 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 SFTA2Q6UW10 78 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 WDR86Q86TI4 376 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 HAPLN4Q86UW8 402 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 ZNF664Q8N3J9 261 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 OR5AU1Q8NGC0 362 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 OR5R1Q8NH85 324 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 OCC1Q8TAD7 63 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 NPIPB3Q92617 1050 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 CORO2AQ92828 525 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 RAB37Q96AX2 223 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 BBC3Q96PG8 261 aaPredicted RBP4.15□□□□□ -1.75
CCDC39-204ENST00000476379 SEBOXQ9HB31 216 aaPredicted RBP4.15□□□□□ -1.75
CCDC39-204ENST00000476379 SDF2L1Q9HCN8 221 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 SLC45A2Q9UMX9 530 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 TCF19Q9Y242 345 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 WIPI2Q9Y4P8 454 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 A0A1W2PN81 502 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 hADV38S2A0JD32 116 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 M0R2Z0 102 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 CHEK1O14757 476 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 RBFOX2O43251 390 aaKnown RBP eCLIP4.15□□□□□ -1.75
CCDC39-204ENST00000476379 ZNF207O43670 478 aaKnown RBP4.15□□□□□ -1.75
CCDC39-204ENST00000476379 NUPR1O60356 82 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 LINC00869P0C866 280 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 HTN1P15515 57 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 TIMP3P35625 211 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 CDKN1AP38936 164 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 RND2P52198 227 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 ID3Q02535 119 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 CENPWQ5EE01 88 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 KLF17Q5JT82 389 aaPredicted RBP4.15□□□□□ -1.75
CCDC39-204ENST00000476379 ZNF841Q6ZN19 808 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 OR8A1Q8NGG7 326 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 ZNF596Q8TC21 504 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 PGLYRP4Q96LB8 373 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 AP1S3Q96PC3 154 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 NAGKQ9UJ70 344 aa4.15□□□□□ -1.75
CCDC39-204ENST00000476379 UNC79Q9P2D8 2635 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 OOEPA6NGQ2 149 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 TOX3O15405 576 aaPredicted RBP4.14□□□□□ -1.75
CCDC39-204ENST00000476379 TNFSF4P23510 183 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 FKBP2P26885 142 aaKnown RBP4.14□□□□□ -1.75
CCDC39-204ENST00000476379 GRNP28799 593 aaKnown RBP4.14□□□□□ -1.75
CCDC39-204ENST00000476379 PKIAP61925 76 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 ACSF3Q4G176 576 aaPredicted RBP4.14□□□□□ -1.75
CCDC39-204ENST00000476379 ZNF585BQ52M93 769 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 NMSQ5H8A3 153 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 ZNF506Q5JVG8 444 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 FAM90A2PQ658T7 463 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 ZNF324BQ6AW86 544 aaPredicted RBP4.14□□□□□ -1.75
CCDC39-204ENST00000476379 FAM214BQ7L5A3 538 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 TCF24Q7RTU0 167 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 PRNTQ86SH4 94 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 C22orf15Q8WYQ4 148 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 CIB3Q96Q77 187 aaPredicted RBP4.14□□□□□ -1.75
CCDC39-204ENST00000476379 MYOZ1Q9NP98 299 aaPredicted RBP4.14□□□□□ -1.75
CCDC39-204ENST00000476379 OR51B2Q9Y5P1 312 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 F8P00451 2351 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 IGLV3-12A0A075B6K2 115 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 B4DEV8 164 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 IGKV1-16P04430 117 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 CD82P27701 267 aa4.14□□□□□ -1.75
CCDC39-204ENST00000476379 PPIFP30405 207 aaKnown RBP4.14□□□□□ -1.75
CCDC39-204ENST00000476379 PTTG1IPP53801 180 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms