RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 PAFAH1B2P68402 229 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 FABP5Q01469 135 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 THOC7Q6I9Y2 204 aaKnown RBP13.21□□□□□ -0.29
SHH-205ENST00000472308 STHQ8IWL8 128 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 C10orf67Q8IYJ2 551 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 GIMAP1Q8WWP7 306 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 ST8SIA2Q92186 375 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 APOHP02749 345 aaPredicted RBP13.2□□□□□ -0.3
SHH-205ENST00000472308 RELQ04864 619 aaPredicted RBP13.2□□□□□ -0.3
SHH-205ENST00000472308 CDNFQ49AH0 187 aa13.2□□□□□ -0.3
SHH-205ENST00000472308 HSD17B13Q7Z5P4 300 aaPredicted RBP13.2□□□□□ -0.3
SHH-205ENST00000472308 CENPSQ8N2Z9 138 aa13.2□□□□□ -0.3
SHH-205ENST00000472308 CSNK1G2-AS1Q8NCQ2 148 aa13.2□□□□□ -0.3
SHH-205ENST00000472308 NUDCD2Q8WVJ2 157 aa13.2□□□□□ -0.3
SHH-205ENST00000472308 DCSTAMPQ9H295 470 aa13.2□□□□□ -0.3
SHH-205ENST00000472308 NDUFA4L2Q9NRX3 87 aa13.2□□□□□ -0.3
SHH-205ENST00000472308 AGRNO00468 2067 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 ERICH4A6NGS2 130 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 IFITM5A6NNB3 132 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 C16orf90A8MZG2 172 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 HPRT1P00492 218 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 RANBP1P43487 201 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 MSMO1Q15800 293 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 TMEM41BQ5BJD5 291 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 HACD4Q5VWC8 232 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 SECTM1Q8WVN6 248 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 VSIRQ9H7M9 311 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 CLEC5AQ9NY25 188 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 ANXA10Q9UJ72 324 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 TBC1D24Q9ULP9 559 aa13.19□□□□□ -0.3
SHH-205ENST00000472308 TRAV2A0A0B4J234 112 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 METTL21EPA6NDL7 271 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 PTGES3LE9PB15 166 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 SSX5O60225 188 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 IFNA10P01566 189 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 SPP1P10451 314 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 PSMA1P25786 263 aaKnown RBP13.18□□□□□ -0.3
SHH-205ENST00000472308 TRAM1Q15629 374 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 Q8N1X5 172 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 PACRGLQ8N7B6 248 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 OR1L8Q8NGR8 309 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 LSM10Q969L4 123 aaKnown RBP13.18□□□□□ -0.3
SHH-205ENST00000472308 NXF2Q9GZY0 626 aaKnown RBP13.18□□□□□ -0.3
SHH-205ENST00000472308 ATG5Q9H1Y0 275 aa13.18□□□□□ -0.3
SHH-205ENST00000472308 IGHV3-66A0A0C4DH42 116 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 TMEM235A6NFC5 223 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 DNASE2O00115 360 aaPredicted RBP13.17□□□□□ -0.3
SHH-205ENST00000472308 ST8SIA3O43173 380 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 HSMCR30P0CW71 290 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 PTHLHP12272 177 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 ARL6IP1Q15041 203 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 SOHLH1Q5JUK2 328 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 MORN3Q6PF18 240 aaPredicted RBP13.17□□□□□ -0.3
SHH-205ENST00000472308 DMBX1Q8NFW5 382 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 OR13F1Q8NGS4 319 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 HINT2Q9BX68 163 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 PLEKHA2Q9HB19 425 aa13.17□□□□□ -0.3
SHH-205ENST00000472308 KNCNA6PVL3 124 aa13.16□□□□□ -0.3
SHH-205ENST00000472308 I3L2K1 104 aa13.16□□□□□ -0.3
SHH-205ENST00000472308 CD5P06127 495 aa13.16□□□□□ -0.3
SHH-205ENST00000472308 C1orf134Q5TEV5 83 aa13.16□□□□□ -0.3
SHH-205ENST00000472308 TMEM14BQ9NUH8 114 aa13.16□□□□□ -0.3
SHH-205ENST00000472308 FCGR2CP31995 323 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 TNP2Q05952 138 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 TOMM20LQ6UXN7 152 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 UBE2DNLQ8IWF7 75 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 ZBTB34Q8NCN2 500 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 OR51H1Q8NH63 302 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 SLC25A46Q96AG3 418 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 COMMD9Q9P000 198 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 NSG2Q9Y328 171 aa13.15□□□□□ -0.3
SHH-205ENST00000472308 MARCH11A6NNE9 402 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 PPYP01298 95 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 IFNA21P01568 189 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 IFNA17P01571 189 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 IGHV3-48P01763 117 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 CATR1Q13166 79 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 UBE2UQ5VVX9 321 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 OR1P1Q8NH06 330 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 ZFAND3Q9H8U3 227 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 C8orf4Q9NR00 106 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 RABAC1Q9UI14 185 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 OR51B2Q9Y5P1 312 aa13.14□□□□□ -0.31
SHH-205ENST00000472308 TRAV1-2A0A0B4J238 106 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 DBX1A6NMT0 343 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 K7EQG2 157 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 EIF4EP06730 217 aaKnown RBP13.13□□□□□ -0.31
SHH-205ENST00000472308 MFAP4P55083 255 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 RPL11P62913 178 aaKnown RBP13.13□□□□□ -0.31
SHH-205ENST00000472308 MLLT11Q13015 90 aaPredicted RBP13.13□□□□□ -0.31
SHH-205ENST00000472308 ZNF818PQ6ZRF7 136 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 DUSP18Q8NEJ0 188 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 TXN2Q99757 166 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 GINS3Q9BRX5 216 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 SLC5A7Q9GZV3 580 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 ACOT13Q9NPJ3 140 aa13.13□□□□□ -0.31
SHH-205ENST00000472308 DMBT1Q9UGM3 2413 aaPredicted RBP13.13□□□□□ -0.31
SHH-205ENST00000472308 NACAE9PAV3 2078 aa13.12□□□□□ -0.31
SHH-205ENST00000472308 PDCD5O14737 125 aa13.12□□□□□ -0.31
SHH-205ENST00000472308 ZNF688P0C7X2 276 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms