RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 TENM1Q9UKZ4 2725 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 IGKV3D-7A0A0C4DH55 119 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 IGKV3OR2-268A0A0C4DH90 116 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 SDCBPO00560 298 aaPredicted RBP1.1□□□□□ -2.23
PTCD3-209ENST00000472044 CLPSP04118 112 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 SULT1A1P50225 295 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 SPCS3P61009 180 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 SUPT4H1P63272 117 aaKnown RBP1.1□□□□□ -2.23
PTCD3-209ENST00000472044 HIST2H3PS2Q5TEC6 136 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 C10orf105Q8TEF2 133 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 RASSF5Q8WWW0 418 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 C11orf40Q8WZ69 217 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 DERL1Q9BUN8 251 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 RP1P56715 2156 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 COL4A5P29400 1685 aa1.1□□□□□ -2.23
PTCD3-209ENST00000472044 KMT2BQ9UMN6 2715 aaPredicted RBP1.09□□□□□ -2.23
PTCD3-209ENST00000472044 ADCY9O60503 1353 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 DLG5Q8TDM6 1919 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 ANAPC1Q9H1A4 1944 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 HMCN1Q96RW7 5635 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 SMIM23A6NLE4 172 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 PSMD12O00232 456 aaPredicted RBP1.09□□□□□ -2.23
PTCD3-209ENST00000472044 IGKV1-5P01602 117 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 IFNA16P05015 189 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 CD79AP11912 226 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 RPS4Y1P22090 263 aaKnown RBP1.09□□□□□ -2.23
PTCD3-209ENST00000472044 HIST1H1TP22492 207 aaPredicted RBP1.09□□□□□ -2.23
PTCD3-209ENST00000472044 STX5Q13190 355 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 ZNF345Q14585 488 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 AADACL3Q5VUY0 350 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 C8orf74Q6P047 294 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 RPL22L1Q6P5R6 122 aaKnown RBP1.09□□□□□ -2.23
PTCD3-209ENST00000472044 C20orf196Q8IYI0 205 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 ZNF439Q8NDP4 499 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 OR13C4Q8NGS5 318 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 KLK6Q92876 244 aa1.09□□□□□ -2.23
PTCD3-209ENST00000472044 ADAT1Q9BUB4 502 aaKnown RBP1.09□□□□□ -2.23
PTCD3-209ENST00000472044 PARD6GQ9BYG4 376 aaPredicted RBP1.09□□□□□ -2.23
PTCD3-209ENST00000472044 SOX21Q9Y651 276 aaPredicted RBP1.09□□□□□ -2.23
PTCD3-209ENST00000472044 TOPBP1Q92547 1522 aa1.09□□□□□ -2.24
PTCD3-209ENST00000472044 IGKV2-40A0A087WW87 121 aaPredicted RBP1.08□□□□□ -2.24
PTCD3-209ENST00000472044 TGIF2-C20orf24A0A0A6YYL0 155 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 IGKV1D-43A0A0B4J1Z2 117 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 IGKV2D-40P01614 121 aaPredicted RBP1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HLA-DRB1P01911 266 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST1H2BOP23527 126 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST1H2BBP33778 126 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST1H2BDP58876 126 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 PSME3P61289 254 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 SNRPD2P62316 118 aaKnown RBP1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST1H2BCP62807 126 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 KISS1Q15726 138 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST2H2BEQ16778 126 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 ACOT6Q3I5F7 207 aaPredicted RBP1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.08□□□□□ -2.24
PTCD3-209ENST00000472044 Q8N2B8 174 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 OR5B17Q8NGF7 314 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST1H2BHQ93079 126 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST1H2BNQ99877 126 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 HIST1H2BMQ99879 126 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 YIPF3Q9GZM5 350 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 PRTFDC1Q9NRG1 225 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 CMTM6Q9NX76 183 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 ARFGEF3Q5TH69 2177 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 NUP155O75694 1391 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 MTUS2Q5JR59 1369 aa1.08□□□□□ -2.24
PTCD3-209ENST00000472044 WRNQ14191 1432 aaPredicted RBP eCLIP1.07□□□□□ -2.24
PTCD3-209ENST00000472044 SETD5Q9C0A6 1442 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 TNNC2P02585 160 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 PMP2P02689 132 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 SERPINA6P08185 405 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 KRTAP10-4P60372 401 aaPredicted RBP1.07□□□□□ -2.24
PTCD3-209ENST00000472044 SPANXN3Q5MJ09 141 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 MCFD2Q8NI22 146 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 NIPSNAP1Q9BPW8 284 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 FBXL12Q9NXK8 326 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 ALPK2Q86TB3 2170 aa1.07□□□□□ -2.24
PTCD3-209ENST00000472044 PLB1Q6P1J6 1458 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 ZNF106Q9H2Y7 1883 aaKnown RBP1.06□□□□□ -2.24
PTCD3-209ENST00000472044 IGKV3-7A0A075B6H7 116 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 PQLC2LA1A4F0 135 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 CHP2O43745 196 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 G6PCP35575 357 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 EIF2B2P49770 351 aaKnown RBP1.06□□□□□ -2.24
PTCD3-209ENST00000472044 HBA1P69905 142 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 C10orf55Q5SWW7 151 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 OR8J2Q8NGG1 315 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 PFN4Q8NHR9 129 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 TMEM106AQ96A25 262 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 SCGB3A1Q96QR1 104 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 COMMD5Q9GZQ3 224 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 MRPL27Q9P0M9 148 aaKnown RBP1.06□□□□□ -2.24
PTCD3-209ENST00000472044 VPS29Q9UBQ0 182 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 TP73-AS1Q9UF72 201 aa1.06□□□□□ -2.24
PTCD3-209ENST00000472044 ECM29Q5VYK3 1845 aa1.05□□□□□ -2.24
PTCD3-209ENST00000472044 PLXND1Q9Y4D7 1925 aa1.05□□□□□ -2.24
PTCD3-209ENST00000472044 HECW2Q9P2P5 1572 aa1.05□□□□□ -2.24
PTCD3-209ENST00000472044 EXPH5Q8NEV8 1989 aa1.05□□□□□ -2.24
PTCD3-209ENST00000472044 FAAHO00519 579 aa1.05□□□□□ -2.24
PTCD3-209ENST00000472044 IL9P15248 144 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms