RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 SLC35G3Q8N808 338 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SPANXA2-OT1Q8N9U9 137 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 OR4K13Q8NH42 304 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 OR5AK2Q8NH90 309 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 PFN4Q8NHR9 129 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 MFSD8Q8NHS3 518 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 TNFRSF14Q92956 283 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 ITFG2Q969R8 447 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 TMEM203Q969S6 136 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SMIM19Q96E16 107 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 ZMYND19Q96E35 227 aaPredicted RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 CPNE2Q96FN4 548 aaPredicted RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 S100A16Q96FQ6 103 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 OR2A7Q96R45 310 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 C7orf50Q9BRJ6 194 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 POTEKPQ9BYX7 375 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 PLA2G12AQ9BZM1 189 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 ULBP3Q9BZM4 244 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SLC22A4Q9H015 551 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 TXNIPQ9H3M7 391 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 RERGLQ9H628 205 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 DAZ1Q9NQZ3 744 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 INIPQ9NRY2 104 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 TAS2R8Q9NYW2 309 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 RBM12B-AS1Q9P1G2 102 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 COMMD3Q9UBI1 195 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 PAIP2BQ9ULR5 123 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 LSM2Q9Y333 95 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 HDGFL3Q9Y3E1 203 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SPAG17Q6Q759 2223 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SEC16AO15027 2179 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 BRWD1Q9NSI6 2320 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 MKI67P46013 3256 aaKnown RBP2.26□□□□□ -2.05
VPS41-210ENST00000462429 IGLV3-32A0A0A0MS00 114 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 LOC102725191A0A1B0GVB3 256 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 FUOMA2VDF0 154 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 NAP1L6A6NFF2 107 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 FAM183AA6NL82 134 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 C21orf140B9A014 251 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 D6RAR5 112 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 H3BP45 60 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 CLDN34H7C241 214 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 J3QRE1 110 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 J3QRK9 145 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 MFNGO00587 321 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 ORC5O43913 435 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 OR7C2O60412 319 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 FADS1O60427 444 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 CBR3O75828 277 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 UBL3O95164 117 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 CXorf1O96002 111 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 IGHMP01871 453 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 RD3LP0DJH9 198 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 SPI1P17947 270 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 RCVRNP35243 200 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 EVX1P49640 407 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 GDI2P50395 445 aaKnown RBP2.26□□□□□ -2.05
VPS41-210ENST00000462429 DSCR4P56555 118 aaPredicted RBP2.26□□□□□ -2.05
VPS41-210ENST00000462429 ZNF117Q03924 483 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 SSBP1Q04837 148 aaKnown RBP2.26□□□□□ -2.05
VPS41-210ENST00000462429 RPL18Q07020 188 aaKnown RBP2.26□□□□□ -2.05
VPS41-210ENST00000462429 SSX1Q16384 188 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 NNATQ16517 81 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 TMEM241Q24JQ0 296 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 CEACAM16Q2WEN9 425 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 Q499Y3 187 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 ACSM3Q53FZ2 586 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 TMEM244Q5VVB8 128 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 GLT8D1Q68CQ7 371 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 DGAT2L6Q6ZPD8 337 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 Q6ZT83 130 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 OLIG3Q7RTU3 272 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 LINC00596Q86U02 117 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 MARCH3Q86UD3 253 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 COMTD1Q86VU5 262 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 RPS19BP1Q86WX3 136 aaKnown RBP2.26□□□□□ -2.05
VPS41-210ENST00000462429 Q8N402 240 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 TOMM5Q8N4H5 51 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 ZNF676Q8N7Q3 588 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 YIPF7Q8N8F6 280 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 ZDHHC22Q8N966 263 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 ST20-AS1Q8NBB2 130 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 APCDD1LQ8NCL9 501 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 OR4K17Q8NGC6 315 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 OR8D4Q8NGM9 314 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 OR2Y1Q8NGV0 311 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 GPR119Q8TDV5 335 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 THEM6Q8WUY1 208 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 TSLPQ969D9 159 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 NMNAT3Q96T66 252 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 WFDC6Q9BQY6 131 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 ZNF649Q9BS31 505 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 DDA1Q9BW61 102 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 ZNF436Q9C0F3 470 aaPredicted RBP2.26□□□□□ -2.05
VPS41-210ENST00000462429 SRRQ9GZT4 340 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 HDHD2Q9H0R4 259 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 OR2S2Q9NQN1 319 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 PARP11Q9NR21 331 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 DIABLOQ9NR28 239 aa2.26□□□□□ -2.05
VPS41-210ENST00000462429 PAQR5Q9NXK6 330 aaPredicted RBP2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms