RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 MDFICQ9P1T7 246 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 WASHC3Q9Y3C0 194 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 TPRKBQ9Y3C4 175 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 RNF11Q9Y3C5 154 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 PAM16Q9Y3D7 125 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 TRIP11Q15643 1979 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 CITO14578 2027 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 MYH7BA7E2Y1 1941 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 COL1A2P08123 1366 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 MYO5AQ9Y4I1 1855 aaKnown RBP4.31□□□□□ -1.72
VPS41-209ENST00000457055 PARP14Q460N5 1801 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 SAA2-SAA4A0A096LPE2 208 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 TRDV1A0A1B0GX56 115 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 TCRBV3S1A0A5B6 114 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 LINC01553A4QN01 128 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 J3QQQ9 107 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 J3QT63 122 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 RAMP1O60894 148 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 WISP2O76076 250 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 HLA-DRB1P01911 266 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 MMP7P09237 267 aaPredicted RBP4.31□□□□□ -1.72
VPS41-209ENST00000457055 CTLA4P16410 223 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 CRYBB3P26998 211 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 PFN2P35080 140 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 PPICP45877 212 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 DEFB103AP81534 67 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 KIAA0040Q15053 153 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 CD226Q15762 336 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 CTF1Q16619 201 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 COA6Q5JTJ3 125 aaKnown RBP4.31□□□□□ -1.72
VPS41-209ENST00000457055 PIK3CD-AS1Q5SR53 167 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 Q5XG85 94 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 PVRIGQ6DKI7 326 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 TMEM207Q6UWW9 146 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 ZNF793Q6ZN11 406 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 SSX8Q7RTT4 187 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 PIP4P1Q86T03 277 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 LINC00471Q8N535 108 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 KCNRGQ8N5I3 272 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 LINC01465Q8N7H1 131 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 TCEANCQ8N8B7 351 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 OR4C16Q8NGL9 310 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 FGF11Q92914 225 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 TSLPQ969D9 159 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 TMEM230Q96A57 120 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 SLC25A44Q96H78 314 aaPredicted RBP4.31□□□□□ -1.72
VPS41-209ENST00000457055 PEBP4Q96S96 227 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 MRPL20Q9BYC9 149 aaKnown RBP4.31□□□□□ -1.72
VPS41-209ENST00000457055 Q9HAA7 133 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 TVP23BQ9NYZ1 205 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 NUDT4Q9NZJ9 180 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 ENPP4Q9Y6X5 453 aa4.31□□□□□ -1.72
VPS41-209ENST00000457055 DSPP15924 2871 aaKnown RBP4.31□□□□□ -1.72
VPS41-209ENST00000457055 HELZ2Q9BYK8 2649 aaKnown RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 USP9XQ93008 2570 aaPredicted RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 A0A087X0T9 212 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 A0A1W2PP18 115 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 OR51F1A6NGY5 319 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 LOC730098B7Z3J9 87 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 SULT2B1O00204 365 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 SLC17A2O00624 439 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 PIRO00625 290 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 NPIPB7O75200 414 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 SEC11BP0C7V7 166 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 CTSEP14091 401 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 PTGDSP41222 190 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 RPS10P46783 165 aaKnown RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 ATP4BP51164 291 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 DAD1P61803 113 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 HLA-DRB3P79483 266 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 DAZ2Q13117 558 aaKnown RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 ENDOGQ14249 297 aaKnown RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 ZNF141Q15928 474 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 DUSP5Q16690 384 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 GSG1Q2KHT4 349 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 VMA21Q3ZAQ7 101 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 ZNF324BQ6AW86 544 aaPredicted RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 OR2T2Q6IF00 324 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 TRNP1Q6NT89 227 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 CXCL17Q6UXB2 119 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 HEPN1Q6WQI6 88 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 TEX43Q6ZNM6 134 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 CEACAM19Q7Z692 300 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 TMEM179BQ7Z7N9 219 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 DAZ4Q86SG3 579 aaKnown RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 SLC25A45Q8N413 288 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 ZDHHC22Q8N966 263 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 ZNF564Q8TBZ8 553 aaPredicted RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 SSC4DQ8WTU2 575 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 PHLDA1Q8WV24 401 aaPredicted RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 RTN4IP1Q8WWV3 396 aaPredicted RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 FRZBQ92765 325 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 C4orf45Q96LM5 186 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 ZNF300Q96RE9 604 aaPredicted RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 SOSTQ9BQB4 213 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 THTPAQ9BU02 230 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 DUSP21Q9H596 190 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 DAZ1Q9NQZ3 744 aaKnown RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 DAZ3Q9NR90 486 aaKnown RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 MPC1Q9Y5U8 109 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms