RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 GALR1P47211 349 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 UBE2E1P51965 193 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 SLC25A11Q02978 314 aaKnown RBP3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 CDSNQ15517 529 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 BVES-AS1Q5T3Y7 98 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 FAM72AQ5TYM5 149 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 FAM72DQ6L9T8 149 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 PRSS41Q7RTY9 318 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 CEACAM19Q7Z692 300 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 TRPT1Q86TN4 253 aaKnown RBP3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 FAM72BQ86X60 149 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 ZCCHC24Q8N2G6 241 aaKnown RBP3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 ZIC4Q8N9L1 334 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 OR5D14Q8NGL3 314 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF564Q8TBZ8 553 aaPredicted RBP3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 UBE2E3Q969T4 207 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 UBE2E2Q96LR5 201 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 FOXC2Q99958 501 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 HES7Q9BYE0 225 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF665Q9H7R5 613 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF581Q9P0T4 197 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 WDR83OSQ9Y284 106 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 MYOFQ9NZM1 2061 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 ACACAQ13085 2346 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 PCDH15Q96QU1 1955 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 LAMA1P25391 3075 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 TRBV20-1A0A075B6N2 111 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 TRAV18A0A075B6X5 111 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 SNRPGP15A8MWD9 76 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 GGTLC3B5MD39 225 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 UMAD1C9J7I0 102 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 CDX4O14627 284 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 PROSCO94903 275 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 MRPL3P09001 348 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 FGF6P10767 208 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 VDAC2P45880 294 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 GLIPR1P48060 266 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 MIDNQ504T8 468 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 C11orf87Q6NUJ2 197 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF880Q6PDB4 577 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 Q6Q795 121 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 LCN15Q6UWW0 184 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 Q6ZRG5 221 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 TGIF2LYQ8IUE0 185 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 PRR22Q8IZ63 422 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 VKORC1L1Q8N0U8 176 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 IGFBPL1Q8WX77 278 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 BMFQ96LC9 184 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 ISG20L2Q9H9L3 353 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 PARP11Q9NR21 331 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 TMEM242Q9NWH2 141 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 MTFP1Q9UDX5 166 aa3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 COL5A1P20908 1838 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-209ENST00000456975 BPTFQ12830 3046 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF860A6NHJ4 632 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 F8W1H4 67 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 K7EMT4 169 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 NUDT14O95848 222 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 RENP00797 406 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 TNFP01375 233 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 IGHMP01871 453 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 SEC11BP0C7V7 166 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 KIR2DS2P43631 304 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 TAS2R46P59540 309 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 FOXI1Q12951 378 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 C1DQ13901 141 aaKnown RBP3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 IHHQ14623 411 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 PAPPA-AS1Q5QFB9 102 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 LCN8Q6JVE9 175 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 DPPA3Q6W0C5 159 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 SHISA6Q6ZSJ9 500 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 ANKRD37Q7Z713 158 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 C1orf158Q8N1D5 194 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF615Q8N8J6 731 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 OR4C16Q8NGL9 310 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 OSR1Q8TAX0 266 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 KLK6Q92876 244 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 STARD4Q96DR4 205 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 MS4A6EQ96DS6 147 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 AP1S3Q96PC3 154 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 RARRES2Q99969 163 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 SPRY4Q9C004 299 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF442Q9H7R0 627 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 ST20Q9HBF5 79 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 SLC2A6Q9UGQ3 507 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 FZR1Q9UM11 496 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 OR1A2Q9Y585 309 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 CACNA1EQ15878 2313 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 TMED7-TICAM2A0A0A6YYA0 188 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 FAM236AA0A1B0GUQ0 79 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 FAM236BA0A1B0GV22 79 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF727A8MUV8 499 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 NPIPB7O75200 414 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 NDUFB4O95168 129 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 CA2P00918 260 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 H2BFMP0C1H6 154 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 LINC00032P0C843 101 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 DRD3P35462 400 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF93P35789 620 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 RND2P52198 227 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms