RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 DPF1Q92782 380 aa11.05□□□□□ -0.64
COL3A1-203ENST00000450867 WDR12Q9GZL7 423 aaKnown RBP11.05□□□□□ -0.64
COL3A1-203ENST00000450867 SHPKQ9UHJ6 478 aa11.05□□□□□ -0.64
COL3A1-203ENST00000450867 F11RQ9Y624 299 aaKnown RBP11.05□□□□□ -0.64
COL3A1-203ENST00000450867 SORL1Q92673 2214 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.04□□□□□ -0.64
COL3A1-203ENST00000450867 ST8SIA3O43173 380 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 LYRM1O43325 122 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 NDUFB8O95169 186 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 ZP3P21754 424 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 EGFEM1PQ0D2K5 195 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 TMED4Q7Z7H5 227 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 OR2C3Q8N628 320 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 SLC35G3Q8N808 338 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 OR1L6Q8NGR2 347 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 OR52E5Q8NH55 327 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 PEF1Q9UBV8 284 aaKnown RBP11.04□□□□□ -0.64
COL3A1-203ENST00000450867 FBXL7Q9UJT9 491 aa11.04□□□□□ -0.64
COL3A1-203ENST00000450867 PRKDCP78527 4128 aaKnown RBP11.04□□□□□ -0.64
COL3A1-203ENST00000450867 CYB5BO43169 146 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 SFT2D2O95562 160 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 DEFA4P12838 97 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 HOXD3P31249 432 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-203ENST00000450867 SLURP1P55000 103 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 MFAP2P55001 183 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 PPP1R1AQ13522 171 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 ZNF846Q147U1 533 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 LGI3Q8N145 548 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 OR1P1Q8NH06 330 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 DCUN1D4Q92564 292 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 DLX4Q92988 240 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-203ENST00000450867 GPR146Q96CH1 333 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 CXorf58Q96LI9 332 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 ATP6V0BQ99437 205 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 HINT2Q9BX68 163 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-203ENST00000450867 THYN1Q9P016 225 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 CACFD1Q9UGQ2 172 aa11.03□□□□□ -0.64
COL3A1-203ENST00000450867 BMPR1BO00238 502 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 OVOL1O14753 267 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 TRBV12-3P01733 135 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 SPCS3P61009 180 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 KLF5Q13887 457 aaPredicted RBP11.02□□□□□ -0.65
COL3A1-203ENST00000450867 ANKRD55Q3KP44 614 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 PVRIGQ6DKI7 326 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 RNASE11Q8TAA1 199 aaKnown RBP11.02□□□□□ -0.65
COL3A1-203ENST00000450867 VN1R17PQ8TDU5 208 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 CCDC140Q96MF4 163 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 PLEKHA3Q9HB20 300 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 PRR13Q9NZ81 148 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 CACNG5Q9UF02 275 aa11.02□□□□□ -0.65
COL3A1-203ENST00000450867 TRBV7-1A0A0A6YYK4 115 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 LINC00854A0A1B0GVQ3 168 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 ANKRD34BA5PLL1 514 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 MFSD2BA6NFX1 497 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 VAMP1P23763 118 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 INSL3P51460 131 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 RAB25P57735 213 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 ASAH1Q13510 395 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 BSXQ3C1V8 233 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 C9orf66Q5T8R8 295 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 LYZL2Q7Z4W2 148 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 C1QL4Q86Z23 238 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 ZNF502Q8TBZ5 544 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 EEF1AKMT3Q96AZ1 226 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 TBC1D24Q9ULP9 559 aa11.01□□□□□ -0.65
COL3A1-203ENST00000450867 A0A1B0GU03 582 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 C9orf170A2RU37 121 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 K7EIM0 57 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 UPK1BO75841 260 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 IFNA17P01571 189 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 SULT1A3P0DMM9 295 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 SULT1A4P0DMN0 295 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 SLC25A6P12236 298 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 MECP2P51608 486 aaKnown RBP11□□□□□ -0.65
COL3A1-203ENST00000450867 ERHP84090 104 aaKnown RBP11□□□□□ -0.65
COL3A1-203ENST00000450867 ACSM6Q6P461 480 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 PDCD10Q9BUL8 212 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 FLVCR2Q9UPI3 526 aa11□□□□□ -0.65
COL3A1-203ENST00000450867 SEC14L6B5MCN3 397 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 PITX3O75364 302 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 TCRBP04435 133 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 OR4E1P0C645 316 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 FCGR2BP31994 310 aaPredicted RBP10.99□□□□□ -0.65
COL3A1-203ENST00000450867 DEFA6Q01524 100 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 DHRS2Q13268 280 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 SMCO1Q147U7 214 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 SLC25A24Q6NUK1 477 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 LYG2Q86SG7 212 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 C20orf85Q9H1P6 137 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 HSPB7Q9UBY9 170 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 TMED3Q9Y3Q3 217 aa10.99□□□□□ -0.65
COL3A1-203ENST00000450867 I3L2K1 104 aa10.98□□□□□ -0.65
COL3A1-203ENST00000450867 GGCTO75223 188 aaKnown RBP10.98□□□□□ -0.65
COL3A1-203ENST00000450867 HLA-AP01891 365 aaKnown RBP10.98□□□□□ -0.65
COL3A1-203ENST00000450867 RNASE2P10153 161 aaKnown RBP10.98□□□□□ -0.65
COL3A1-203ENST00000450867 IFITM3Q01628 133 aa10.98□□□□□ -0.65
COL3A1-203ENST00000450867 RPEL1Q2QD12 228 aa10.98□□□□□ -0.65
COL3A1-203ENST00000450867 SPINK9Q5DT21 86 aa10.98□□□□□ -0.65
COL3A1-203ENST00000450867 REC114Q7Z4M0 266 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms