RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TMEM155Q4W5P6 130 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 SIGLECL1Q8N7X8 197 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 RNASEH2CQ8TDP1 164 aaKnown RBP6.11□□□□□ -1.43
SYNE1-213ENST00000448038 NPFFR1Q9GZQ6 430 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 YLPM1P49750 1951 aaKnown RBP6.11□□□□□ -1.43
SYNE1-213ENST00000448038 TSTD3H0UI37 97 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 TMEM78Q5T7P6 136 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 LAMTOR1Q6IAA8 161 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 EBLN2Q6P2I7 272 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 TXNDC17Q9BRA2 123 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 RPRMQ9NS64 109 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV3OR16-13A0A075B7E8 117 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV3-74A0A0B4J1X5 117 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 H3BTX0 84 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 J3QKU1 62 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 M0QZK8 103 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 GATA4P43694 442 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 RPL30P62888 115 aaKnown RBP6.11□□□□□ -1.43
SYNE1-213ENST00000448038 TFF3Q07654 80 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 GBGT1Q8N5D6 347 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 CACNG8Q8WXS5 425 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 ISOC2Q96AB3 205 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 MRPL32Q9BYC8 188 aaKnown RBP6.11□□□□□ -1.43
SYNE1-213ENST00000448038 RNF222A6NCQ9 220 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 CGB1A6NKQ9 187 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 M0R1W7 72 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 SLC31A2O15432 143 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 HSBP1O75506 76 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 CFPP27918 469 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 GPR183P32249 361 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 RAB9AP51151 201 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 WDR86Q86TI4 376 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 OR10J6PQ8NGY7 276 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 RNF126Q9BV68 326 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 UFC1Q9Y3C8 167 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 PTPRQQ9UMZ3 2332 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 TMSB15BA0A087X1C1 80 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 RRHO14718 337 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 DLX6P56179 175 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 FA2HQ7L5A8 372 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 LINC00305Q7Z4B0 112 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 DCAF16Q9NXF7 216 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 SUPT4H1P63272 117 aaKnown RBP6.1□□□□□ -1.43
SYNE1-213ENST00000448038 ID3Q02535 119 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 LRTM2Q8N967 370 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 IGLV3-9A0A075B6K5 115 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV1-3A0A0C4DH29 117 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 C10orf142B7Z368 130 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 HSPB1P04792 205 aaKnown RBP6.1□□□□□ -1.43
SYNE1-213ENST00000448038 SLC25A16P16260 332 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 GRNP28799 593 aaKnown RBP6.1□□□□□ -1.43
SYNE1-213ENST00000448038 BATFQ16520 125 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 TPTE2P1Q5T6R2 138 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 ZNF880Q6PDB4 577 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 Q6ZS49 121 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 SLC25A48Q6ZT89 311 aaKnown RBP6.1□□□□□ -1.43
SYNE1-213ENST00000448038 Q8TCH9 128 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 ZNF586Q9NXT0 402 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 CGAP01215 116 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 EFNB3Q15768 340 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 MINOS1Q5TGZ0 78 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 CLEC19AQ6UXS0 136 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 C1orf147Q96MC9 270 aaPredicted RBP6.1□□□□□ -1.43
SYNE1-213ENST00000448038 PRSS22Q9GZN4 317 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 BET1LQ9NYM9 111 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 MINOS1-NBL1R4GNA1 71 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV3-49A0A0A0MS15 119 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 IFITM2Q01629 132 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 WDR73Q6P4I2 378 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 BRD3OSQ6XYD6 125 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 OR4X2Q8NGF9 303 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 IFT22Q9H7X7 185 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 ACACBO00763 2458 aa6.1□□□□□ -1.43
SYNE1-213ENST00000448038 ZNF207O43670 478 aaKnown RBP6.09□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV3-11P01762 117 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 HOXA4Q00056 320 aaPredicted RBP6.09□□□□□ -1.43
SYNE1-213ENST00000448038 PRCDQ00LT1 54 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 TMEM18Q96B42 140 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 RCC1LQ96I51 464 aaKnown RBP6.09□□□□□ -1.43
SYNE1-213ENST00000448038 NOL4LQ96MY1 436 aaPredicted RBP6.09□□□□□ -1.43
SYNE1-213ENST00000448038 H0YIZ8 118 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 PF4P02776 101 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 WNT2P09544 360 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 RAB5AP20339 215 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 PSG9Q00887 426 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 MRPL54Q6P161 138 aaKnown RBP6.09□□□□□ -1.43
SYNE1-213ENST00000448038 RARRES2Q99969 163 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 FAM90A9PA6NNJ1 464 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 NDUFS8O00217 210 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 PRB1P04280 392 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 LMO1P25800 156 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 GCHFRP30047 84 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 RIGQ13278 110 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 HERPUD1Q15011 391 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 CBLN2Q8IUK8 224 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 OR2D3Q8NGH3 330 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 OR4D5Q8NGN0 318 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 DMRTA2Q96SC8 542 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV3OR16-8A0A075B7F1 116 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms