RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 HLA-DRB1P01911 266 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 IL6RP08887 468 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-208ENST00000437607 IAPPP10997 89 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 CHRNA7P36544 502 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 POLR2GP62487 172 aaKnown RBP eCLIP9.55□□□□□ -0.88
PTPRF-208ENST00000437607 PRCDQ00LT1 54 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 CD300CQ08708 224 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 AARDQ4LEZ3 155 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 SPINK9Q5DT21 86 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 CXorf66Q5JRM2 361 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-208ENST00000437607 C10orf55Q5SWW7 151 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 C11orf87Q6NUJ2 197 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 C5orf56Q8N8D9 126 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 Q8N9W7 124 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 GRPEL2Q8TAA5 225 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 DTD1Q8TEA8 209 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 DCUN1D4Q92564 292 aa9.55□□□□□ -0.88
PTPRF-208ENST00000437607 WDR89Q96FK6 387 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-208ENST00000437607 CIB3Q96Q77 187 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-208ENST00000437607 SACSQ9NZJ4 4579 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 TRAV14DV4A0A0A6YYC5 116 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 A0A1W2PRX2 142 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 LY86O95711 162 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 C1QBP02746 253 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 VDAC2P45880 294 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-208ENST00000437607 KRTAP10-11P60412 298 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 HSPE1P61604 102 aaKnown RBP9.54□□□□□ -0.88
PTPRF-208ENST00000437607 PJVKQ0ZLH3 352 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 IL15RAQ13261 267 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 TCTEX1D4Q5JR98 221 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 PRSS54Q6PEW0 395 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 SRSF12Q8WXF0 261 aaKnown RBP9.54□□□□□ -0.88
PTPRF-208ENST00000437607 ARPC1AQ92747 370 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 RAB40CQ96S21 281 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 RBKSQ9H477 322 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 PLSCR3Q9NRY6 295 aa9.54□□□□□ -0.88
PTPRF-208ENST00000437607 WI2-2373I1.2A0A1W2PRP0 233 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 E5RGE8 158 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 HNRNPCP07910 306 aaKnown RBP eCLIP9.53□□□□□ -0.88
PTPRF-208ENST00000437607 MYOD1P15172 320 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 CD33P20138 364 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 NUP62P37198 522 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-208ENST00000437607 CAV2P51636 162 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 RPL23AP62750 156 aaKnown RBP9.53□□□□□ -0.88
PTPRF-208ENST00000437607 ID3Q02535 119 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 FXYD3Q14802 87 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 C9orf152Q5JTZ5 239 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 OR5AU1Q8NGC0 362 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 PPP1R14BQ96C90 147 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 HIPK2Q9H2X6 1198 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 PARP11Q9NR21 331 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 OR5AC2Q9NZP5 309 aa9.53□□□□□ -0.88
PTPRF-208ENST00000437607 TEX50A0A1B0GTY4 177 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 G3V3Q6 166 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 H3BP45 60 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 BOLA2-SMG1P6H3BVE0 249 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 SLC25A4P12235 298 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 RPP30P78346 268 aaKnown RBP9.52□□□□□ -0.89
PTPRF-208ENST00000437607 MRGPRG-AS1Q2M3A8 158 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 ARSJQ5FYB0 599 aaPredicted RBP9.52□□□□□ -0.89
PTPRF-208ENST00000437607 ZNF562Q6V9R5 426 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 HSD17B13Q7Z5P4 300 aaPredicted RBP9.52□□□□□ -0.89
PTPRF-208ENST00000437607 HYLS1Q96M11 299 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 HEYLQ9NQ87 328 aaPredicted RBP9.52□□□□□ -0.89
PTPRF-208ENST00000437607 ZC4H2Q9NQZ6 224 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 PAIP2BQ9ULR5 123 aaKnown RBP9.52□□□□□ -0.89
PTPRF-208ENST00000437607 WSB1Q9Y6I7 421 aa9.52□□□□□ -0.89
PTPRF-208ENST00000437607 IGHV7-81A0A0B4J1V7 117 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 H0YIZ8 118 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 ARPC5O15511 151 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 TSC22D2O75157 780 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 LYL1P12980 280 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 P2RY1P47900 373 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 TAS2R30P59541 319 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 CX3CL1P78423 397 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 ERHP84090 104 aaKnown RBP9.51□□□□□ -0.89
PTPRF-208ENST00000437607 NDPQ00604 133 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 Q5BKY6 102 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 C10orf99Q6UWK7 81 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 NOXA1Q86UR1 476 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 STX12Q86Y82 276 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 INO80EQ8NBZ0 244 aaPredicted RBP9.51□□□□□ -0.89
PTPRF-208ENST00000437607 SLC24A4Q8NFF2 622 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 HSPB9Q9BQS6 159 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 SRSF8Q9BRL6 282 aaKnown RBP9.51□□□□□ -0.89
PTPRF-208ENST00000437607 NDUFA4L2Q9NRX3 87 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 PSENENQ9NZ42 101 aa9.51□□□□□ -0.89
PTPRF-208ENST00000437607 SH2D7A6NKC9 451 aaPredicted RBP9.5□□□□□ -0.89
PTPRF-208ENST00000437607 FCN1O00602 326 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 ATP6V0E1O15342 81 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 SCAF4O95104 1147 aaKnown RBP9.5□□□□□ -0.89
PTPRF-208ENST00000437607 IFNA10P01566 189 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 OR8U8P0C7N1 319 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 NPY1RP25929 384 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 EIF2B2P49770 351 aaKnown RBP9.5□□□□□ -0.89
PTPRF-208ENST00000437607 SSBP2P81877 361 aaPredicted RBP9.5□□□□□ -0.89
PTPRF-208ENST00000437607 ECSCRQ19T08 205 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 SPANXN5Q5MJ07 72 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 SLC35E3Q7Z769 313 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 ZNF546Q86UE3 836 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms