RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 G6PC2Q9NQR9 355 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 SPACA3Q8IXA5 215 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 CENPWQ5EE01 88 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 ZNF418Q8TF45 676 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 C19orf24Q9BVV8 132 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 TUBD1Q9UJT1 453 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 HIVEP2P31629 2446 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 PRSS53Q2L4Q9 553 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 TLN2Q9Y4G6 2542 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 COL5A1-AS1Q5SY13 56 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 RARRES2Q99969 163 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 CDKN1AP38936 164 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 ASIPP42127 132 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 WDR82Q6UXN9 313 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 C8orf88P0DMB2 117 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 MDKP21741 143 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 STHQ8IWL8 128 aa10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 MRPL16Q9NX20 251 aaKnown RBP10.21□□□□□ -0.77
CCDC88A-207ENST00000436346 MT-ND6P03923 174 aa10.21□□□□□ -0.78
CCDC88A-207ENST00000436346 HIVEP3Q5T1R4 2406 aa10.21□□□□□ -0.78
CCDC88A-207ENST00000436346 WISP3O95389 354 aaPredicted RBP10.21□□□□□ -0.78
CCDC88A-207ENST00000436346 TSPAN13O95857 204 aa10.21□□□□□ -0.78
CCDC88A-207ENST00000436346 LEPROTL1O95214 131 aa10.21□□□□□ -0.78
CCDC88A-207ENST00000436346 SMDT1Q9H4I9 107 aa10.21□□□□□ -0.78
CCDC88A-207ENST00000436346 COX5BP10606 129 aa10.21□□□□□ -0.78
CCDC88A-207ENST00000436346 UBE2DNLQ8IWF7 75 aa10.21□□□□□ -0.78
CCDC88A-207ENST00000436346 IGHV3-11P01762 117 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 CBLN4Q9NTU7 201 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 CRYBB3P26998 211 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 RBM38Q9H0Z9 239 aaKnown RBP10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 SRIP30626 198 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 RNASE6Q93091 150 aaKnown RBP10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 SPSB4Q96A44 273 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 WFDC6Q9BQY6 131 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 NPIPB8E9PQR5 432 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 TXNDC17Q9BRA2 123 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 PARLQ9H300 379 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 FBXL15Q9H469 300 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 DPM3Q9P2X0 92 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 CRYBA2P53672 197 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 PAPPA-AS1Q5QFB9 102 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 SAMD13Q5VXD3 122 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 NPCDR1Q9BY65 106 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 TMEM160Q9NX00 188 aa10.2□□□□□ -0.78
CCDC88A-207ENST00000436346 H3BRM9 83 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 FAM201AQ5SY85 155 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 TMEM170BQ5T4T1 132 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 HBBP68871 147 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 TMEM42Q69YG0 159 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 GREM1O60565 184 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 CFAP161Q6P656 301 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 TMEM136Q6ZRR5 245 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 RTN4RL2Q86UN3 420 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 GLMPQ8WWB7 406 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 COL25A1Q9BXS0 654 aaPredicted RBP10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 COL4A6Q14031 1691 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 IGHV1-2P23083 117 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 MRPL20Q9BYC9 149 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 CYP2G1PQ6ZSU1 146 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 TMEM167AQ8TBQ9 72 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 NPIPB3Q92617 1050 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 FMC1Q96HJ9 113 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 HINT1P49773 126 aaPredicted RBP10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 GDF15Q99988 308 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 C21orf62Q9NYP8 219 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 KBTBD11-OT1A0A1B0GTJ5 212 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 ICAM4Q14773 271 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 SLC25A28Q96A46 364 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 GPR146Q96CH1 333 aa10.19□□□□□ -0.78
CCDC88A-207ENST00000436346 EFEMP2O95967 443 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 SMIM8Q96KF7 97 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 MSGN1A6NI15 193 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 FOLR2P14207 255 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 FAM216BQ8N7L0 139 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 ZNF708P17019 499 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 REC114Q7Z4M0 266 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 MYOD1P15172 320 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 GP6Q9HCN6 339 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 SAA2-SAA4A0A096LPE2 208 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 C7orf66A4D0T2 115 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 SAA2P0DJI9 122 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 TDGF1P13385 188 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 P2RY4P51582 365 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 EIF4EBP2Q13542 120 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 ATOH7Q8N100 152 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 STPG2Q8N412 459 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 ZNF414Q96IQ9 312 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 DMRTA2Q96SC8 542 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 TGIF2-C20orf24A0A0A6YYL0 155 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 LOC390937A0A1W2PQ73 354 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 NPIPB4C9JG80 1138 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 ERASQ7Z444 233 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 VGLL1Q99990 258 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 TOMM7Q9P0U1 55 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 GAGE10A6NGK3 116 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 C12orf54Q6X4T0 127 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 IGKV1D-42A0A075B6H8 117 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 LINC00469Q8N7U9 141 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 LINC00470Q9BZP3 86 aa10.18□□□□□ -0.78
CCDC88A-207ENST00000436346 MUC21A0A0G2JKD1 596 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms