RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 A0A1W2PRQ8 180 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 ANXA3P12429 323 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 OR2F1Q13607 317 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 LINC01620Q4KN68 170 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM61Q8N0U2 210 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 C15orf54Q8N8G6 183 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 LINC00301Q8NCQ3 95 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 OR5A2Q8NGI9 324 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 MRGPRFQ96AM1 343 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 TSSK6Q9BXA6 273 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 SPAG4Q9NPE6 437 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 KIAA1551Q9HCM1 1747 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 TRBV5-3A0A0A0MS03 114 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 TRBV7-1A0A0A6YYK4 115 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 UBE2QL1A1L167 161 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 UNC119BA6NIH7 251 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 PRAC2D3DTV9 90 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 NPIPB9F8W1W9 429 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 H0YL77 283 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 SRSF10O75494 262 aaKnown RBP2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 PRSS1P07477 247 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 CD14P08571 375 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 FCER1GP30273 86 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 RPL8P62917 257 aaKnown RBP2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 CX3CL1P78423 397 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 HLA-DRB5Q30154 266 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 COX20Q5RI15 118 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 C16orf54Q6UWD8 224 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 Q6ZQT7 251 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 Q6ZVH6 145 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 OLIG3Q7RTU3 272 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 FAM90A1Q86YD7 464 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 SLAMF6Q96DU3 332 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 RHOFQ9HBH0 211 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 SLC2A9Q9NRM0 540 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 CACFD1Q9UGQ2 172 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 PSORS1C2Q9UIG4 136 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 IGLV7-46A0A075B6I9 117 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 BUB3O43684 328 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 FADS1O60427 444 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 CA2P00918 260 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 H1F0P07305 194 aaKnown RBP2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 MGPP08493 103 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 IL7P13232 177 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 CBLN1P23435 193 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 GLYATQ6IB77 296 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 FDX2Q6P4F2 183 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 TIFABQ6ZNK6 161 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 ARPINQ7Z6K5 226 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 AKAP14Q86UN6 197 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF680Q8NEM1 530 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 PEBP4Q96S96 227 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 IMMP2LQ96T52 175 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 MESP1Q9BRJ9 268 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 SLC50A1Q9BRV3 221 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 PSMG3Q9BT73 122 aaPredicted RBP2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 ABHD6Q9BV23 337 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 FAM107BQ9H098 131 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 ABCG5Q9H222 651 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 GPR84Q9NQS5 396 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 GPR27Q9NS67 375 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 NINJ2Q9NZG7 142 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 CDHR4A6H8M9 788 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 HLA-DQB1P01920 261 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TSPAN19P0C672 248 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 RD3LP0DJH9 198 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 AMY2BP19961 511 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 COX5AP20674 150 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 CCKARP32238 428 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 KIR2DS2P43631 304 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 RPL28P46779 137 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 NMUP48645 174 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 HCCSP53701 268 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 PSG4Q00888 419 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SLC17A1Q14916 467 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR1Q1Q15612 314 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 LBHQ53QV2 105 aaPredicted RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 LINC01556Q5JQF7 62 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 DHRS11Q6UWP2 260 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 Q6ZRP5 223 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 C9orf47Q6ZRZ4 202 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 CPOQ8IVL8 374 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 RNF113BQ8IZP6 322 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR2T33Q8NG76 320 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR10P1Q8NGE3 313 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR56B1Q8NGI3 324 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR6T1Q8NGN1 323 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 GHSRQ92847 366 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 LEAP2Q969E1 77 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 DNAJC19Q96DA6 116 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 C16orf74Q96GX8 76 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SLC41A3Q96GZ6 507 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF48Q96MX3 618 aaPredicted RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TSSK2Q96PF2 358 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 AQP10Q96PS8 301 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SLIRPQ9GZT3 109 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 ZDHHC18Q9NUE0 388 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR1A1Q9P1Q5 309 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SNX24Q9Y343 169 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SPEF2Q9C093 1822 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms