RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GGTLC3B5MD39 225 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 IGHMP01871 453 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 KLK2P20151 261 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 ACP7Q6ZNF0 438 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 NPCDR1Q9BY65 106 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 TICRRQ7Z2Z1 1910 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 TRAV24A0A0B4J272 114 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV3-66A0A0C4DH42 116 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 FXYD1O00168 92 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 SAA1P0DJI8 122 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-204ENST00000423058 ASCL4Q6XD76 172 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 C20orf204Q6ZNR8 217 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 CIARTQ8N365 385 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-204ENST00000423058 SLC25A45Q8N413 288 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 NPIPB3Q92617 1050 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 CACNA1GO43497 2377 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 EML6Q6ZMW3 1958 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 CDCP2Q5VXM1 449 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 FAM166AQ6J272 317 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 CACNG8Q8WXS5 425 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 WNT10AQ9GZT5 417 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 TRAV14DV4A0A0A6YYC5 116 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 A0A1B0GTL3 188 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 LOC390937A0A1W2PQ73 354 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 NBEAP1P0C6P0 100 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 CRYBB3P26998 211 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 JPT2Q9H910 190 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 TCF21O43680 179 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 NTN1O95631 604 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV3-23P01764 117 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 CELA2AP08217 269 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 SNRPCP09234 159 aaKnown RBP5.82□□□□□ -1.48
SCN1A-204ENST00000423058 WNT2P09544 360 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 MORN3Q6PF18 240 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-204ENST00000423058 OR5P3Q8WZ94 311 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 ABHD17AQ96GS6 310 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 LINC00312Q9Y6C7 94 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 TGIF2-C20orf24A0A0A6YYL0 155 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 APOMO95445 188 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 PEBP1P30086 187 aaKnown RBP5.82□□□□□ -1.48
SCN1A-204ENST00000423058 LEAP2Q969E1 77 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 CFHR5Q9BXR6 569 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 E9PQ18 207 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 SRIP30626 198 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 ZP1P60852 638 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 BIVMQ86UB2 503 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 A0A1W2PP11 408 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 NPIPB13A6NJU9 1138 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 NBR2O15453 112 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 ZXDCQ2QGD7 858 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-204ENST00000423058 ORMDL3Q8N138 153 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 GPR146Q96CH1 333 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 OVOL2Q9BRP0 275 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 PSMG3Q9BT73 122 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-204ENST00000423058 SPANXDQ9BXN6 97 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 PEF1Q9UBV8 284 aaKnown RBP5.82□□□□□ -1.48
SCN1A-204ENST00000423058 PAX2Q02962 417 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 FER1L6-AS1Q8NA97 138 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 OR1P1Q8NH06 330 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 HS3ST3B1Q9Y662 390 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 ANAPC1Q9H1A4 1944 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 SAP30O75446 220 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 CENPWQ5EE01 88 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 XAF1Q6GPH4 301 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 DMRTA2Q96SC8 542 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 MRPL20Q9BYC9 149 aaKnown RBP5.82□□□□□ -1.48
SCN1A-204ENST00000423058 EDA2RQ9HAV5 297 aa5.82□□□□□ -1.48
SCN1A-204ENST00000423058 ADAMTS7Q9UKP4 1686 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 TRAV8-6A0A0B4J262 113 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 TMEM50AO95807 157 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 ERGP11308 486 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 TMEM95Q3KNT9 176 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 FOXB2Q5VYV0 432 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 GPR132Q9UNW8 380 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 PPP1R32Q7Z5V6 425 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 CHCHD5Q9BSY4 110 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 MS4A6AQ9H2W1 248 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 NOTCH3Q9UM47 2321 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 TGIF1Q15583 401 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 TBR1Q16650 682 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 LTBRP36941 435 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 TMEM252Q8N6L7 170 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 FBXL15Q9H469 300 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 MRPS18CQ9Y3D5 142 aaKnown RBP5.81□□□□□ -1.48
SCN1A-204ENST00000423058 FNDC1Q4ZHG4 1894 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-204ENST00000423058 KBTBD11-OT1A0A1B0GTJ5 212 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 NDUFA3O95167 84 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 THBDP07204 575 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 FHITP49789 147 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 SRSF1Q07955 248 aaKnown RBP eCLIP5.81□□□□□ -1.48
SCN1A-204ENST00000423058 LINC01559Q495D7 138 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV3-49A0A0A0MS15 119 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 C17orf100A8MU93 164 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 SRSF6Q13247 344 aaKnown RBP5.81□□□□□ -1.48
SCN1A-204ENST00000423058 PKIGQ9Y2B9 76 aa5.81□□□□□ -1.48
SCN1A-204ENST00000423058 FABP5P3A8MUU1 101 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 ZG16O60844 167 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 NR2C2APQ86WQ0 139 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 TTC9CQ8N5M4 171 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 ZNRF1Q8ND25 227 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms