RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 NRN1Q9NPD7 142 aa9.05□□□□□ -0.96
LIMS1-207ENST00000422797 SLC35D1Q9NTN3 355 aa9.05□□□□□ -0.96
LIMS1-207ENST00000422797 BET1LQ9NYM9 111 aa9.05□□□□□ -0.96
LIMS1-207ENST00000422797 FBXL7Q9UJT9 491 aa9.05□□□□□ -0.96
LIMS1-207ENST00000422797 ZFP30Q9Y2G7 519 aa9.05□□□□□ -0.96
LIMS1-207ENST00000422797 TRAV3A0A0B4J244 114 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 OR7C2O60412 319 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 IGHV3-13P01766 116 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 APCSP02743 223 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 SAA2P0DJI9 122 aaPredicted RBP9.04□□□□□ -0.96
LIMS1-207ENST00000422797 SFTPCP11686 197 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 CRYBB3P26998 211 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 KIR2DL2P43627 348 aaPredicted RBP9.04□□□□□ -0.96
LIMS1-207ENST00000422797 GATA4P43694 442 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 PRRX1P54821 245 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 KRTDAPP60985 99 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 CNEP1R1Q8N9A8 125 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 STARD4Q96DR4 205 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 DCTN5Q9BTE1 182 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 IL17BQ9UHF5 180 aa9.04□□□□□ -0.96
LIMS1-207ENST00000422797 XIRP2A4UGR9 3374 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 PTPRBP23467 1997 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 IGHV1-18A0A0C4DH31 117 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 A0A1W2PN81 502 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 LHBP01229 141 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 CDKN1AP38936 164 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 CASP6P55212 293 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 LINC00205P59089 165 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 SELENOVP59797 346 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 BPIFB3P59826 476 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 KLF5Q13887 457 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-207ENST00000422797 SPATA45Q537H7 98 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 RNFT1Q5M7Z0 435 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 DMRTA1Q5VZB9 504 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 BHLHA15Q7RTS1 189 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-207ENST00000422797 VKORC1L1Q8N0U8 176 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 ZNF439Q8NDP4 499 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 OR4A5Q8NH83 315 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 OSR1Q8TAX0 266 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-207ENST00000422797 GRAMD2BQ96HH9 432 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 RBM14Q96PK6 669 aaKnown RBP9.03□□□□□ -0.96
LIMS1-207ENST00000422797 SAP30LQ9HAJ7 183 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 DKK4Q9UBT3 224 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 PROCRQ9UNN8 238 aa9.03□□□□□ -0.96
LIMS1-207ENST00000422797 SOX21Q9Y651 276 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-207ENST00000422797 SDK1Q7Z5N4 2213 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 A0A1W2PS18 150 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 AHRRA9YTQ3 701 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 BMPR1BO00238 502 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 FOXH1O75593 365 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 AGFG2O95081 481 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 HNRNPA3P51991 378 aaKnown RBP9.02□□□□□ -0.97
LIMS1-207ENST00000422797 ZNF134P52741 427 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 CD69Q07108 199 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 C17orf58Q2M2W7 97 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 CT45A1Q5HYN5 189 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 Q8N976 141 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 STXBP6Q8NFX7 210 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 CT45A3Q8NHU0 189 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 SLC25A33Q9BSK2 321 aa9.02□□□□□ -0.97
LIMS1-207ENST00000422797 MRPS16Q9Y3D3 137 aaKnown RBP9.02□□□□□ -0.97
LIMS1-207ENST00000422797 TRAV17A0A0B4J275 112 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 DPRXA6NFQ7 191 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 GGTLC3B5MD39 225 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 OR2J3O76001 311 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 APOA2P02652 100 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 IGLC2P0DOY2 106 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 IGLC3P0DOY3 106 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 HIST1H1EP10412 219 aaKnown RBP9.01□□□□□ -0.97
LIMS1-207ENST00000422797 USF1P22415 310 aaPredicted RBP9.01□□□□□ -0.97
LIMS1-207ENST00000422797 SRIP30626 198 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 SUB1P53999 127 aaKnown RBP eCLIP9.01□□□□□ -0.97
LIMS1-207ENST00000422797 KLF3P57682 345 aaPredicted RBP9.01□□□□□ -0.97
LIMS1-207ENST00000422797 ERHP84090 104 aaKnown RBP9.01□□□□□ -0.97
LIMS1-207ENST00000422797 OR5I1Q13606 314 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 STUMQ69YW2 141 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 FAM71F2Q6NXP2 309 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 SLC25A48Q6ZT89 311 aaKnown RBP9.01□□□□□ -0.97
LIMS1-207ENST00000422797 VSTM2AQ8TAG5 236 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 ORAOV1Q8WV07 137 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 TXN2Q99757 166 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 GCM1Q9NP62 436 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 RNF7Q9UBF6 113 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 CNTRLQ7Z7A1 2325 aa9.01□□□□□ -0.97
LIMS1-207ENST00000422797 A0A1W2PNU3 283 aaPredicted RBP9□□□□□ -0.97
LIMS1-207ENST00000422797 ACTL6BO94805 426 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 IGLV2-8P01709 118 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 RNASE2P10153 161 aaKnown RBP9□□□□□ -0.97
LIMS1-207ENST00000422797 MGST1P10620 155 aaKnown RBP9□□□□□ -0.97
LIMS1-207ENST00000422797 TNFSF4P23510 183 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 GLRXP35754 106 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 CA7P43166 264 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 UBE2L3P68036 154 aaKnown RBP9□□□□□ -0.97
LIMS1-207ENST00000422797 GTF3C1Q12789 2109 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 DOLPP1Q86YN1 238 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 LYG1Q8N1E2 194 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 MBD6Q96DN6 1003 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 ZNF503Q96F45 646 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 HINT2Q9BX68 163 aa9□□□□□ -0.97
LIMS1-207ENST00000422797 DNAJC4Q9NNZ3 241 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms