RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 LSM10Q969L4 123 aaKnown RBP8.57□□□□□ -1.04
USP4-204ENST00000416417 MISP3Q96FF7 219 aa8.57□□□□□ -1.04
USP4-204ENST00000416417 BSCL2Q96G97 398 aaPredicted RBP8.57□□□□□ -1.04
USP4-204ENST00000416417 SPAG8Q99932 426 aaPredicted RBP8.57□□□□□ -1.04
USP4-204ENST00000416417 DAZ1Q9NQZ3 744 aaKnown RBP8.57□□□□□ -1.04
USP4-204ENST00000416417 NDUFA4O00483 81 aa8.56□□□□□ -1.04
USP4-204ENST00000416417 FCGR2BP31994 310 aaPredicted RBP8.56□□□□□ -1.04
USP4-204ENST00000416417 IZUMO4Q1ZYL8 232 aa8.56□□□□□ -1.04
USP4-204ENST00000416417 SPINK9Q5DT21 86 aa8.56□□□□□ -1.04
USP4-204ENST00000416417 RNF2Q99496 336 aa8.56□□□□□ -1.04
USP4-204ENST00000416417 GPR31O00270 319 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 CYB5BO43169 146 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 YIF1AO95070 293 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 IGKV1-39P01597 117 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 IGKV1D-39P04432 117 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 CTSGP08311 255 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 NAT1P18440 290 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 PRSS3P35030 304 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 APOC4P55056 127 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 KCTD21Q4G0X4 260 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 RNASE12Q5GAN4 147 aaKnown RBP8.55□□□□□ -1.04
USP4-204ENST00000416417 LAMTOR1Q6IAA8 161 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 TBC1D26Q86UD7 250 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 SNX29P2Q8IUI4 249 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 GBGT1Q8N5D6 347 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 OR6F1Q8NGZ6 308 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 SLC25A46Q96AG3 418 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 YIPF6Q96EC8 236 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 SMPXQ9UHP9 88 aa8.55□□□□□ -1.04
USP4-204ENST00000416417 BMI1P35226 326 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 TAS2R46P59540 309 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 TSPAN5P62079 268 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 TNFRSF9Q07011 255 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 THOC7Q6I9Y2 204 aaKnown RBP8.54□□□□□ -1.04
USP4-204ENST00000416417 SPSB3Q6PJ21 355 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 HSD17B13Q7Z5P4 300 aaPredicted RBP8.54□□□□□ -1.04
USP4-204ENST00000416417 CMTM1Q8IZ96 169 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 BORCS5Q969J3 196 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 PINX1Q96BK5 328 aaKnown RBP8.54□□□□□ -1.04
USP4-204ENST00000416417 RNF183Q96D59 192 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 TMEM14BQ9NUH8 114 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 COMMD3Q9UBI1 195 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 PRNDQ9UKY0 176 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 IGHV3-66A0A0C4DH42 116 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 OR4C46A6NHA9 309 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 C15orf61A6NNL5 157 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 I3L2K1 104 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 M0QYG6 137 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 CHEK1O14757 476 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 FGF2P09038 288 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 CEMP1Q6PRD7 247 aaPredicted RBP8.54□□□□□ -1.04
USP4-204ENST00000416417 Q6ZWC4 215 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 WFDC3Q8IUB2 231 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 STPG3Q8N7X2 389 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 MRGPRFQ96AM1 343 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 TMEM56Q96MV1 263 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 RHPN1-AS1Q9BWJ2 59 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 MAP6D1Q9H9H5 199 aa8.54□□□□□ -1.04
USP4-204ENST00000416417 IGHV7-4-1A0A0J9YVY3 117 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 K7EMT4 169 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 MT-CO2P00403 227 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 PI3P19957 117 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 NCS1P62166 190 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 RPP25LQ8N5L8 163 aaKnown RBP8.53□□□□□ -1.04
USP4-204ENST00000416417 TMEM116Q8NCL8 245 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 OR1P1Q8NH06 330 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 OR4A16Q8NH70 328 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 GPX8Q8TED1 209 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 SEC22AQ96IW7 307 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 TP53TG1Q9Y2A0 90 aa8.53□□□□□ -1.04
USP4-204ENST00000416417 NUPR2A6NF83 97 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 C15orf62A8K5M9 175 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 NUPL2O15504 423 aaKnown RBP8.52□□□□□ -1.05
USP4-204ENST00000416417 HPGDSO60760 199 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 APOHP02749 345 aaPredicted RBP8.52□□□□□ -1.05
USP4-204ENST00000416417 MFAP4P55083 255 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 VBP1P61758 197 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 H2BFWTQ7Z2G1 175 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 CROCCP3Q8IVE0 287 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 LILRB2Q8N423 598 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 GALNT14Q96FL9 552 aa8.52□□□□□ -1.05
USP4-204ENST00000416417 KIR2DL5BA0A0G2JN68 375 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 KIR2DL5BA0A0G2JPC4 375 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 UBE2CO00762 179 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 DEFB4AO15263 64 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 DEDDO75618 318 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 ELK1P19419 428 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 RELQ04864 619 aaPredicted RBP8.51□□□□□ -1.05
USP4-204ENST00000416417 KIR2DL5AQ8N109 375 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 KIR2DL5BQ8NHK3 375 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 ST8SIA2Q92186 375 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 TSC22D3Q99576 134 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 NXF2Q9GZY0 626 aaKnown RBP8.51□□□□□ -1.05
USP4-204ENST00000416417 FKBP11Q9NYL4 201 aa8.51□□□□□ -1.05
USP4-204ENST00000416417 TRAV14DV4A0A0A6YYC5 116 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 GNG7O60262 68 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 TMEM127O75204 238 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 NANOS2P60321 138 aaKnown RBP8.5□□□□□ -1.05
USP4-204ENST00000416417 PRCDQ00LT1 54 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 FAM90A2PQ658T7 463 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms