RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 SSX3Q99909 188 aa5.28□□□□□ -1.56
VPS41-204ENST00000413141 SRSF8Q9BRL6 282 aaKnown RBP5.28□□□□□ -1.56
VPS41-204ENST00000413141 SLC25A33Q9BSK2 321 aa5.28□□□□□ -1.56
VPS41-204ENST00000413141 IGHV7-81A0A0B4J1V7 117 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 UBE2L5PA0A1B0GUS4 154 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 FGF16O43320 207 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 CNIH1O95406 144 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 IFNA7P01567 189 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 REG1AP05451 166 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 OR13C7P0DN81 318 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 AREGP15514 252 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 SNCAP37840 140 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 ATP5IP56385 69 aaPredicted RBP5.27□□□□□ -1.57
VPS41-204ENST00000413141 RAB11AP62491 216 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 EIF5AP63241 154 aaKnown RBP5.27□□□□□ -1.57
VPS41-204ENST00000413141 CX3CL1P78423 397 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 ERHP84090 104 aaKnown RBP5.27□□□□□ -1.57
VPS41-204ENST00000413141 FXYD3Q14802 87 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 LY6EQ16553 131 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 VWC2Q2TAL6 325 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 ALKAL2Q6UX46 152 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 ZNF562Q6V9R5 426 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 ETV3LQ6ZN32 361 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 IL17RELQ6ZVW7 336 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 HSD17B13Q7Z5P4 300 aaPredicted RBP5.27□□□□□ -1.57
VPS41-204ENST00000413141 HSD17B11Q8NBQ5 300 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 OR10P1Q8NGE3 313 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 SSMEM1Q8WWF3 244 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 C22orf15Q8WYQ4 148 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 P2RX4Q99571 388 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 RASL11BQ9BPW5 248 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 HSPB9Q9BQS6 159 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 GINS3Q9BRX5 216 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 TMEM147Q9BVK8 224 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 PARD6GQ9BYG4 376 aaPredicted RBP5.27□□□□□ -1.57
VPS41-204ENST00000413141 ARV1Q9H2C2 271 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 UBQLN2Q9UHD9 624 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 PITPNC1Q9UKF7 332 aa5.27□□□□□ -1.57
VPS41-204ENST00000413141 OTOGQ6ZRI0 2925 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 IFNA5P01569 189 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 IGHV4-59P01825 116 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 AMY1AP04745 511 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 IFNA4P05014 189 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 APELAP0DMC3 54 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 IER3P46695 156 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 DLK1P80370 383 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 ATP6V1FQ16864 119 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 FAM74A1Q5RGS3 127 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 ASPHD1Q5U4P2 390 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 PVRIGQ6DKI7 326 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 Q6YL49 198 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 SPNS3Q6ZMD2 512 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 C19orf35Q6ZS72 473 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 C16orf82Q7Z2V1 217 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 OR1P1Q8NH06 330 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 OR5R1Q8NH85 324 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 ABHD5Q8WTS1 349 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 SCARB1Q8WTV0 552 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 TMED6Q8WW62 240 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 ZNF48Q96MX3 618 aaPredicted RBP5.26□□□□□ -1.57
VPS41-204ENST00000413141 FAM103A1Q9BTL3 118 aaKnown RBP5.26□□□□□ -1.57
VPS41-204ENST00000413141 GGACTQ9BVM4 153 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 WDR61Q9GZS3 305 aaKnown RBP5.26□□□□□ -1.57
VPS41-204ENST00000413141 SH3BGRL3Q9H299 93 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 PRDM13Q9H4Q3 707 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 UQCC1Q9NVA1 299 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 FBXO7Q9Y3I1 522 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 F11RQ9Y624 299 aaKnown RBP5.26□□□□□ -1.57
VPS41-204ENST00000413141 ZFHX3Q15911 3703 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 CELSR1Q9NYQ6 3014 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 NAV3Q8IVL0 2385 aa5.26□□□□□ -1.57
VPS41-204ENST00000413141 TNCP24821 2201 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 RPS10-NUDT3A0A1W2PQS6 291 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 BTBD17A6NE02 478 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 SH2D7A6NKC9 451 aaPredicted RBP5.25□□□□□ -1.57
VPS41-204ENST00000413141 NPIPB5A8MRT5 1133 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 FNDC10F2Z333 226 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 M0QZK8 103 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 ATP6V0E1O15342 81 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 FBXO24O75426 580 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 SEC11BP0C7V7 166 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 SPP1P10451 314 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 EGR2P11161 476 aaPredicted RBP5.25□□□□□ -1.57
VPS41-204ENST00000413141 CTRB1P17538 263 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 HNF1AP20823 631 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 MDKP21741 143 aaPredicted RBP5.25□□□□□ -1.57
VPS41-204ENST00000413141 ATP6V0CP27449 155 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 SUB1P53999 127 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS41-204ENST00000413141 MFAP2P55001 183 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 RUNX1Q01196 453 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 ARSJQ5FYB0 599 aaPredicted RBP5.25□□□□□ -1.57
VPS41-204ENST00000413141 CTRB2Q6GPI1 263 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 EIF5AL1Q6IS14 154 aaKnown RBP5.25□□□□□ -1.57
VPS41-204ENST00000413141 SLC25A24Q6NUK1 477 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 SLC16A13Q7RTY0 426 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 SGMS2Q8NHU3 365 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 RNASEH2CQ8TDP1 164 aaKnown RBP5.25□□□□□ -1.57
VPS41-204ENST00000413141 GNPNAT1Q96EK6 184 aaPredicted RBP5.25□□□□□ -1.57
VPS41-204ENST00000413141 SLC25A32Q9H2D1 315 aa5.25□□□□□ -1.57
VPS41-204ENST00000413141 PARP11Q9NR21 331 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms