RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 HARBI1Q96MB7 349 aa12.09□□□□□ -0.47
CUX2-202ENST00000397643 AIFM2Q9BRQ8 373 aa12.09□□□□□ -0.47
CUX2-202ENST00000397643 NUDT15Q9NV35 164 aa12.09□□□□□ -0.47
CUX2-202ENST00000397643 COA4Q9NYJ1 87 aa12.09□□□□□ -0.47
CUX2-202ENST00000397643 TRAV6A0A075B6T7 132 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 HPRT1P00492 218 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 APELAP0DMC3 54 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 LPAR6P43657 344 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 BRWD1-AS2P59051 145 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 EWSR1Q01844 656 aaKnown RBP eCLIP12.08□□□□□ -0.48
CUX2-202ENST00000397643 DHODHQ02127 395 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 OVOL2Q9BRP0 275 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 PLEKHA2Q9HB19 425 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 KIAA1109Q2LD37 5005 aa12.08□□□□□ -0.48
CUX2-202ENST00000397643 VPS13DQ5THJ4 4388 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 SRRM4A7MD48 611 aaKnown RBP12.07□□□□□ -0.48
CUX2-202ENST00000397643 HRASP01112 189 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 OR5AC1P0C628 307 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 RPA2P15927 270 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 ANXA7P20073 488 aaKnown RBP12.07□□□□□ -0.48
CUX2-202ENST00000397643 VAMP1P23763 118 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 PMS2P11Q13670 270 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 RGS21Q2M5E4 152 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 TRIM16LQ309B1 348 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 SP6Q3SY56 376 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 ZNF585BQ52M93 769 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 RPP25LQ8N5L8 163 aaKnown RBP12.07□□□□□ -0.48
CUX2-202ENST00000397643 WDR89Q96FK6 387 aaPredicted RBP12.07□□□□□ -0.48
CUX2-202ENST00000397643 GALNT14Q96FL9 552 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 TP53RKQ96S44 253 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 COMMD9Q9P000 198 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 DMRT1Q9Y5R6 373 aa12.07□□□□□ -0.48
CUX2-202ENST00000397643 C2orf70A6NJV1 201 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 ATG12O94817 140 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 S1PR2O95136 353 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 NQO2P16083 231 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 UCP1P25874 307 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 ERVK-16P61578 105 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 EXOSC2Q13868 293 aaKnown RBP12.06□□□□□ -0.48
CUX2-202ENST00000397643 VMA21Q3ZAQ7 101 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 C4orf46Q504U0 113 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 DYNLRB2Q8TF09 96 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 TMEM222Q9H0R3 208 aa12.06□□□□□ -0.48
CUX2-202ENST00000397643 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.05□□□□□ -0.48
CUX2-202ENST00000397643 TRBV9A0A0B4J1U6 114 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 PIGBOS1A0A0B4J2F0 54 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 CXorf65A6NEN9 183 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 NUPR2A6NF83 97 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 MSGN1A6NI15 193 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 INMT-MINDY4F8WBC2 141 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 SFT2D2O95562 160 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 PRH1P02810 166 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 OR4E1P0C645 316 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 OR9G9P0C7N8 305 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 UBE2KP61086 200 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 SUPT4H1P63272 117 aaKnown RBP12.05□□□□□ -0.48
CUX2-202ENST00000397643 SRPXP78539 464 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 RHOGP84095 191 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 PPP1R1AQ13522 171 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 GUCA2BQ16661 112 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 GLYATL2Q8WU03 294 aa12.05□□□□□ -0.48
CUX2-202ENST00000397643 C9orf170A2RU37 121 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 FAM223BA6NKX1 122 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 CDS2O95674 445 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 HLA-AP01891 365 aaKnown RBP12.04□□□□□ -0.48
CUX2-202ENST00000397643 FOLR2P14207 255 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 TMEM187Q14656 261 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 LYG2Q86SG7 212 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 FAM223AQ8IWN6 122 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 LGI3Q8N145 548 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 TEX45Q8NA69 505 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 DMBX1Q8NFW5 382 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 VSTM2AQ8TAG5 236 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 MARVELD1Q9BSK0 173 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 GGTLC1Q9BX51 225 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 DNAH6Q9C0G6 4158 aa12.04□□□□□ -0.48
CUX2-202ENST00000397643 A0A0J9YWU9 116 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 DHFRP00374 187 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 KRASP01116 189 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 IL5P05113 134 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 DHRS2Q13268 280 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 POU2AF1Q16633 256 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 PRSS8Q16651 343 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 CEMP1Q6PRD7 247 aaPredicted RBP12.03□□□□□ -0.48
CUX2-202ENST00000397643 SSX9Q7RTT3 188 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 VKORC1L1Q8N0U8 176 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 COQ8AQ8NI60 647 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 SRSF12Q8WXF0 261 aaKnown RBP12.03□□□□□ -0.48
CUX2-202ENST00000397643 RBPMSQ93062 196 aaKnown RBP12.03□□□□□ -0.48
CUX2-202ENST00000397643 IL22RA2Q969J5 263 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 TMEM56Q96MV1 263 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 PHB2Q99623 299 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 GPN1Q9HCN4 374 aaPredicted RBP12.03□□□□□ -0.48
CUX2-202ENST00000397643 TECRQ9NZ01 308 aaKnown RBP12.03□□□□□ -0.48
CUX2-202ENST00000397643 SELENOKQ9Y6D0 94 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 TMEM56-RWDD3S4R434 201 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 RYR1P21817 5038 aa12.03□□□□□ -0.48
CUX2-202ENST00000397643 MARCH11A6NNE9 402 aa12.02□□□□□ -0.49
CUX2-202ENST00000397643 PPP5D1E7EU14 171 aa12.02□□□□□ -0.49
CUX2-202ENST00000397643 CREBL2O60519 120 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms