RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 IL19Q9UHD0 177 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 TNCP24821 2201 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 SMG1Q96Q15 3661 aaKnown RBP10.39□□□□□ -0.75
SHMT1-205ENST00000395684 DSCAMO60469 2012 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 MMP23AO75900 390 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 IGKV1-16P04430 117 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 BTF3P20290 206 aaKnown RBP10.39□□□□□ -0.75
SHMT1-205ENST00000395684 SLC35B1P78383 322 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 FXYD3Q14802 87 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 C1orf174Q8IYL3 243 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.39□□□□□ -0.75
SHMT1-205ENST00000395684 ZNF439Q8NDP4 499 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 SARAFQ96BY9 339 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 C20orf144Q9BQM9 153 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 SFXN3Q9BWM7 321 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 GNB4Q9HAV0 340 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 PROCRQ9UNN8 238 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 PAM16Q9Y3D7 125 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 PCNX2A6NKB5 2137 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 GGTLC3B5MD39 225 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 GNG10P50151 68 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 POU2AF1Q16633 256 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 VHLLQ6RSH7 139 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 SEM1Q6ZVN7 128 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 CORO2AQ92828 525 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 SAMD10Q9BYL1 202 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 ZNRD1Q9P1U0 126 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 BOD1L1Q8NFC6 3051 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 FNDC10F2Z333 226 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 OR10J4P0C629 311 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 CASP6P55212 293 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 CX3CL1P78423 397 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 KIAA1644Q3SXP7 199 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 PLEKHA3Q9HB20 300 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 TMEM167BQ9NRX6 74 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 NAT8BQ9UHF3 227 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 ARL2-SNX15V9GYD0 113 aa10.38□□□□□ -0.75
SHMT1-205ENST00000395684 M0R1B8 84 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 IGLV2-8P01709 118 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 IRF2P14316 349 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 PRCDQ00LT1 54 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 MIEN1Q9BRT3 115 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 FAM103A1Q9BTL3 118 aaKnown RBP10.37□□□□□ -0.75
SHMT1-205ENST00000395684 TECRQ9NZ01 308 aaKnown RBP10.37□□□□□ -0.75
SHMT1-205ENST00000395684 FBXL7Q9UJT9 491 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 PRNDQ9UKY0 176 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 TRBV9A0A0B4J1U6 114 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 TEX50A0A1B0GTY4 177 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 UPK2O00526 184 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 OR7C2O60412 319 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 GPX1P07203 203 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 CT45A6P0DMU7 189 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 CT45A5P0DMU8 189 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 CT45A7P0DMV0 189 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 TCL1AP56279 114 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 SUMO1P63165 101 aaKnown RBP10.37□□□□□ -0.75
SHMT1-205ENST00000395684 TMEM136Q6ZRR5 245 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 FAM169BQ8N8A8 192 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 DEFB108BQ8NET1 73 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 OR9G1Q8NH87 305 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 NCOR1P1Q9H4R4 102 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 SVILO95425 2214 aa10.37□□□□□ -0.75
SHMT1-205ENST00000395684 ICE1Q9Y2F5 2266 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 RIF1Q5UIP0 2472 aaKnown RBP10.36□□□□□ -0.75
SHMT1-205ENST00000395684 WT1P19544 449 aaPredicted RBP10.36□□□□□ -0.75
SHMT1-205ENST00000395684 KLF3P57682 345 aaPredicted RBP10.36□□□□□ -0.75
SHMT1-205ENST00000395684 IGFL2Q6UWQ7 119 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 SNRNP40Q96DI7 357 aaKnown RBP10.36□□□□□ -0.75
SHMT1-205ENST00000395684 ADTRPQ96IZ2 230 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 OSTCQ9NRP0 149 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 ZNF257Q9Y2Q1 563 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 ZFHX2Q9C0A1 2572 aaPredicted RBP10.36□□□□□ -0.75
SHMT1-205ENST00000395684 ZNF25P17030 456 aaPredicted RBP10.36□□□□□ -0.75
SHMT1-205ENST00000395684 TMEM183BQ1AE95 376 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 TIGITQ495A1 244 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 ASPHD1Q5U4P2 390 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 SIGLECL1Q8N7X8 197 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 Q8N976 141 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 FAM222BQ8WU58 562 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 RCHY1Q96PM5 261 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 GCM1Q9NP62 436 aa10.36□□□□□ -0.75
SHMT1-205ENST00000395684 DSCAML1Q8TD84 2053 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 TRAV17A0A0B4J275 112 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 OR5G3P0C626 314 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 MORN5Q5VZ52 161 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 OR10W1Q8NGF6 305 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 CCL13Q99616 98 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 VAMP8Q9BV40 100 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 A6NNC1 897 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 ISLRO14498 428 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 BRS3P32247 399 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 GLRXP35754 106 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 STUMQ69YW2 141 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 ZNF474Q6S9Z5 364 aaPredicted RBP10.35□□□□□ -0.75
SHMT1-205ENST00000395684 FAM216BQ8N7L0 139 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 SLC35E1Q96K37 410 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 IGF2BP2-AS1Q96M15 143 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 SLC25A33Q9BSK2 321 aa10.35□□□□□ -0.75
SHMT1-205ENST00000395684 TBL2Q9Y4P3 447 aaKnown RBP10.35□□□□□ -0.75
SHMT1-205ENST00000395684 LAMA5O15230 3695 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms