RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 C1orf229Q6ZS94 237 aaPredicted RBP8.18□□□□□ -1.1
COL17A1-203ENST00000393211 TMPRSS7Q7RTY8 843 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 ZNRF1Q8ND25 227 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 ST6GALNAC3Q8NDV1 305 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 OR2V2Q96R30 315 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 ATG101Q9BSB4 218 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 CHRDL1Q9BU40 450 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 MRPL27Q9P0M9 148 aaKnown RBP8.18□□□□□ -1.1
COL17A1-203ENST00000393211 CACNA1DQ01668 2161 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 IGLV3-9A0A075B6K5 115 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 IZUMO1RA6ND01 250 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 DLEU1O43261 78 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 ZNF253O75346 499 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 LINC00614P0C842 121 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 KLF3P57682 345 aaPredicted RBP8.18□□□□□ -1.1
COL17A1-203ENST00000393211 OR5I1Q13606 314 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 FAM231DQ6ZW35 169 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 MOGAT3Q86VF5 341 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 VN1R17PQ8TDU5 208 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 STARD4Q96DR4 205 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 ZNF503Q96F45 646 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 PLPPR2Q96GM1 343 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 IGF2BP2-AS1Q96M15 143 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 ZNF714Q96N38 554 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 SLC25A33Q9BSK2 321 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 RNF7Q9UBF6 113 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 CDC42EP3Q9UKI2 254 aa8.18□□□□□ -1.1
COL17A1-203ENST00000393211 IGHV3OR15-7A0A075B7D8 119 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 TEX50A0A1B0GTY4 177 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 DIRC3C9JPN6 131 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 CDX4O14627 284 aaPredicted RBP8.17□□□□□ -1.1
COL17A1-203ENST00000393211 OR7C2O60412 319 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 IGLV2-8P01709 118 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 ZNF25P17030 456 aaPredicted RBP8.17□□□□□ -1.1
COL17A1-203ENST00000393211 CDKN1AP38936 164 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 CD69Q07108 199 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 TIMM23BQ5SRD1 257 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 IBA57Q5T440 356 aaKnown RBP8.17□□□□□ -1.1
COL17A1-203ENST00000393211 ATP1A1-AS1Q5TC04 95 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 SLC25A48Q6ZT89 311 aaKnown RBP8.17□□□□□ -1.1
COL17A1-203ENST00000393211 LYG1Q8N1E2 194 aa8.17□□□□□ -1.1
COL17A1-203ENST00000393211 OSR1Q8TAX0 266 aaPredicted RBP8.17□□□□□ -1.1
COL17A1-203ENST00000393211 A0A1W2PS18 150 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 MBD3L4A6NDZ8 208 aaPredicted RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 MBD3L3A6NE82 208 aaPredicted RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 MBD3L5A6NJ08 208 aaPredicted RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 GGTLC3B5MD39 225 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 DLL1O00548 723 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 ZNF324O75467 553 aaPredicted RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 ACTL6BO94805 426 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 SP9P0CG40 484 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 RNASE2P10153 161 aaKnown RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 IRF2P14316 349 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 CTRLP40313 264 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 PRRX1P54821 245 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 COL5A1-AS1Q5SY13 56 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 STUMQ69YW2 141 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 DHRS13Q6UX07 377 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 KLHDC1Q8N7A1 406 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 Q8N976 141 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 OR1L4Q8NGR5 311 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 OR4A5Q8NH83 315 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 MBD3L2Q8NHZ7 208 aaPredicted RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 SMIM12Q96EX1 92 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 TMEM208Q9BTX3 173 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 NRN1Q9NPD7 142 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 ZNF331Q9NQX6 463 aaPredicted RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 SLC35D1Q9NTN3 355 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 RPUSD1Q9UJJ7 312 aaKnown RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 FBXL7Q9UJT9 491 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 PAM16Q9Y3D7 125 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 GOLT1BQ9Y3E0 138 aa8.16□□□□□ -1.1
COL17A1-203ENST00000393211 TBL2Q9Y4P3 447 aaKnown RBP8.16□□□□□ -1.1
COL17A1-203ENST00000393211 IGKV1OR2-108A0A075B7D4 117 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 A0A1W2PN81 502 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 PSMB11A5LHX3 300 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 APCSP02743 223 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 CT45A6P0DMU7 189 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 CT45A5P0DMU8 189 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 CT45A7P0DMV0 189 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 AMTP48728 403 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 SELENOVP59797 346 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 SUMO1P63165 101 aaKnown RBP8.15□□□□□ -1.1
COL17A1-203ENST00000393211 ERHP84090 104 aaKnown RBP8.15□□□□□ -1.1
COL17A1-203ENST00000393211 MSMPQ1L6U9 139 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 DOLPP1Q86YN1 238 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 ITLN1Q8WWA0 313 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 HINT2Q9BX68 163 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 RNASE7Q9H1E1 156 aaKnown RBP8.15□□□□□ -1.1
COL17A1-203ENST00000393211 DNAJC4Q9NNZ3 241 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 UQCR10Q9UDW1 63 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 CACNA1GO43497 2377 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 SPEGQ15772 3267 aa8.15□□□□□ -1.1
COL17A1-203ENST00000393211 hADV38S2A0JD32 116 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 C20orf202A1L168 122 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 F2Z2F3 143 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 BMPR1BO00238 502 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 IGHV3-7P01780 117 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 TNFSF4P23510 183 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 G0S2P27469 103 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms