RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FOXA3P55318 350 aaPredicted RBP10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 LINC00312Q9Y6C7 94 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 F5P12259 2224 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 RCC1LQ96I51 464 aaKnown RBP10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 C7orf69Q9H7B7 122 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 DUSP14O95147 198 aaKnown RBP10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 APOMO95445 188 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 COLCA1Q6ZS62 124 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 WNT10AQ9GZT5 417 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 TFF3Q07654 80 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 RNF182Q8N6D2 247 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 COL24A1Q17RW2 1714 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 ARID1AO14497 2285 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 ZNF708P17019 499 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 CYB5R2Q6BCY4 276 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 SLC50A1Q9BRV3 221 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 S4R3C0 116 aa10.8□□□□□ -0.68
CCDC88C-204ENST00000389857 KLF4O43474 513 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 KNL1Q8NG31 2342 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 C1QCP02747 245 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 CTHRC1Q96CG8 243 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 CD7P09564 240 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 CECR9P0C854 216 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 IGLV3-21P80748 117 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 FAM71F2Q6NXP2 309 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 PIN1P1O15428 100 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 RSPO4Q2I0M5 234 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 NIT1Q86X76 327 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 FHITP49789 147 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 PAX2Q02962 417 aa10.79□□□□□ -0.68
CCDC88C-204ENST00000389857 C12orf77C9JDV5 145 aa10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 CA1P00915 261 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 SAA1P0DJI8 122 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 IGHV2OR16-5A0A0B4J2B6 119 aa10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 EIF4EBP2Q13542 120 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 PPP1R32Q7Z5V6 425 aa10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 SPAG8Q99932 426 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 PRSS22Q9GZN4 317 aa10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 IFITM3Q01628 133 aa10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 MRPL20Q9BYC9 149 aaKnown RBP10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 SLC25A15Q9Y619 301 aa10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 NBR2O15453 112 aa10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 SRSF1Q07955 248 aaKnown RBP eCLIP10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 C14orf144Q96I85 54 aa10.78□□□□□ -0.68
CCDC88C-204ENST00000389857 SLC17A3O00476 420 aa10.77□□□□□ -0.68
CCDC88C-204ENST00000389857 SPCS1Q9Y6A9 102 aa10.77□□□□□ -0.68
CCDC88C-204ENST00000389857 FABP5P3A8MUU1 101 aa10.77□□□□□ -0.68
CCDC88C-204ENST00000389857 FAM27E3Q08E93 113 aa10.77□□□□□ -0.68
CCDC88C-204ENST00000389857 PVRIGQ6DKI7 326 aa10.77□□□□□ -0.68
CCDC88C-204ENST00000389857 PGPEP1LA6NFU8 196 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 CSRP2Q16527 193 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 EGR1P18146 543 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 LINC01590Q5TEZ4 76 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 C1QTNF5Q9BXJ0 243 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 TRGV11A0A075B6L2 103 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 A0A087WWC5 75 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 IQCF6A8MYZ5 107 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 IGHV4-39P01824 125 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 PSME4Q14997 1843 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 EFNB1P98172 346 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 SPSB2Q99619 263 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 ZNF257Q9Y2Q1 563 aa10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 CHCHD2Q9Y6H1 151 aaPredicted RBP10.77□□□□□ -0.69
CCDC88C-204ENST00000389857 IGKV3D-20A0A0C4DH25 116 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 C17orf98A8MV24 154 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 HIGD1CA8MV81 97 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 PROB1E7EW31 1015 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 CDK2AP2O75956 126 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 TGFAP01135 160 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 SIGLEC12Q96PQ1 595 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 TRAV21A0A0B4J279 112 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 MSGN1A6NI15 193 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 ZNF883P0CG24 379 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 ZNF318Q5VUA4 2279 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 MRPS18CQ9Y3D5 142 aaKnown RBP10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 TRAV8-2A0A0B4J237 113 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 TRGV4A0A0C4DH28 118 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 PQLC2LA1A4F0 135 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 EGR4Q05215 589 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 MUC21A0A0G2JKD1 596 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 MUC21A0A140T8X8 626 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 C4orf51C9J302 202 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 MUC21Q5SSG8 566 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 MIR17HGQ75NE6 70 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 SLC25A2Q9BXI2 301 aa10.76□□□□□ -0.69
CCDC88C-204ENST00000389857 LINC00518Q8N0U6 118 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 TMEM86BQ8N661 226 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 SSBP4Q9BWG4 385 aaPredicted RBP10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 UCP1P25874 307 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 OR13A1Q8NGR1 328 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 TCRBV4S1A1TA0A5B7 111 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 C17orf100A8MU93 164 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 LDLRAD4O15165 306 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 CMC4P56277 68 aaPredicted RBP10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 RNASE6Q93091 150 aaKnown RBP10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 WFDC6Q9BQY6 131 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 BRWD1Q9NSI6 2320 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 TRAV14DV4A0A0A6YYC5 116 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 FAM216BQ8N7L0 139 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 COL5A3P25940 1745 aaPredicted RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms