RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 SPINK2P20155 84 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 RBPJQ06330 500 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 CEACAM16Q2WEN9 425 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 UFSP1Q6NVU6 142 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 Q6P435 159 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 ZNF645Q8N7E2 425 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 MS4A5Q9H3V2 200 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 WDR54Q9H977 334 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 LOC102723996A0A087X1L8 192 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 REG1BP48304 166 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 SSR4P51571 173 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 EFNB3Q15768 340 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 TIGITQ495A1 244 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 GDF5OSQ5U4N7 250 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 ZNF497Q6ZNH5 498 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 YRDCQ86U90 279 aaKnown RBP12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 ZBTB34Q8NCN2 500 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 CFAP47Q6ZTR5 3102 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 FREM1Q5H8C1 2179 aa12.12□□□□□ -0.47
VPS9D1-201ENST00000389386 GAGE10A6NGK3 116 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 ZIC3O60481 467 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 IGLV2-8P01709 118 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 FOLR3P41439 243 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 FAM120AOSQ5T036 256 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 SAP30LQ9HAJ7 183 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 LAMA5O15230 3695 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 HLA-DRB1P01911 266 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 CA6P23280 308 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 RPL8P62917 257 aaKnown RBP12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 Q0VFX4 171 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 RNFT1Q5M7Z0 435 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 IBA57Q5T440 356 aaKnown RBP12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 ZNF808Q8N4W9 903 aaPredicted RBP12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 OR2T6Q8NHC8 308 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 SSMEM1Q8WWF3 244 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 C1orf159Q96HA4 380 aa12.11□□□□□ -0.47
VPS9D1-201ENST00000389386 GJE1A6NN92 205 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 ACP1P24666 158 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 RASL11AQ6T310 242 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 TMEM186Q96B77 213 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 SCRT2Q9NQ03 307 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 SERTAD4Q9NUC0 356 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 ZNF835Q9Y2P0 537 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 KIAA1549Q9HCM3 1950 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 A0A087X0K7 114 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 C7orf71A4D174 169 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 C9orf172C9J069 976 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 CA1P00915 261 aaPredicted RBP12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 LIFP15018 202 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 TMPRSS3P57727 454 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 TCF15Q12870 199 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 SLC35E4Q6ICL7 350 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 PET117Q6UWS5 81 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 DHRS13Q6UX07 377 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 ZNF841Q6ZN19 808 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 AAED1Q7RTV5 226 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 FAM168AQ92567 244 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 URB1-AS1Q96HZ7 61 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 COL25A1Q9BXS0 654 aaPredicted RBP12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 CLCF1Q9UBD9 225 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 DCHS1Q96JQ0 3298 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 TNRC6AQ8NDV7 1962 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 FAM231BA6NCW3 169 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 PRSS46E5RG02 174 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 RFPL3SP0C7P2 107 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 MRPL21Q7Z2W9 205 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 C5orf17Q8NAS9 161 aa12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 MBNL3Q9NUK0 354 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-201ENST00000389386 ZFHX4Q86UP3 3567 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 PRR33A8MZF0 331 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 SYS1-DBNDD2H3BUS1 97 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 ZNF883P0CG24 379 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 HIST1H1AQ02539 215 aaPredicted RBP12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 CATR1Q13166 79 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 CHRDL1Q9BU40 450 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 KCNIP1Q9NZI2 227 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 LSM4Q9Y4Z0 139 aaKnown RBP12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 CCNOP22674 350 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 SCGB2A2Q13296 93 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 PRSS33Q8NF86 280 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 LOXL2Q9Y4K0 774 aa12.09□□□□□ -0.47
VPS9D1-201ENST00000389386 SH2D7A6NKC9 451 aaPredicted RBP12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 C21orf140B9A014 251 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 OR2J3O76001 311 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 GPR6P46095 362 aaPredicted RBP12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 MFAP2P55001 183 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 FAM53AQ6NSI3 398 aaPredicted RBP12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 LINC00173Q6ZV60 143 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 PPP1R32Q7Z5V6 425 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 POM121L2Q96KW2 1035 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 ZNF716A6NP11 495 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 RHBDL1O75783 438 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 MGST1P10620 155 aaKnown RBP12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 CCL2P13500 99 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 GPR183P32249 361 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 FAM214BQ7L5A3 538 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 NEGR1Q7Z3B1 354 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 OR1N2Q8NGR9 330 aa12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 FNDC4Q9H6D8 234 aaPredicted RBP12.08□□□□□ -0.48
VPS9D1-201ENST00000389386 DSCR4P56555 118 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms