RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TNFRSF1AP19438 455 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PRB3Q04118 309 aaPredicted RBP10.87□□□□□ -0.67
CCDC3-202ENST00000378839 EFNB3Q15768 340 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 TMEM249Q2WGJ8 235 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 CST9LP1Q5W188 147 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 RITA1Q96K30 269 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PYGO2Q9BRQ0 406 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 CTDSP1Q9GZU7 261 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 A0A1W2PPV4 95 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PLAUP00749 431 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 GATA2P23769 480 aaPredicted RBP10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PCP4P48539 62 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PRCDQ00LT1 54 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 TLN1Q9Y490 2541 aaKnown RBP10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PPIAL4EA0A075B759 164 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 CGB1A6NKQ9 187 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PPIAL4DF5H284 164 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 H0YJW9 148 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PPIAL4FP0DN26 164 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PRR20EP86478 221 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PRR20CP86479 221 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PRR20DP86480 221 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PRR20BP86481 221 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PRR20AP86496 221 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 LINC01551Q86U37 167 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 RNASE6Q93091 150 aaKnown RBP10.87□□□□□ -0.67
CCDC3-202ENST00000378839 ADTRPQ96IZ2 230 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 TMEM106BQ9NUM4 274 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 PPIAL4AQ9Y536 164 aa10.87□□□□□ -0.67
CCDC3-202ENST00000378839 HRASP01112 189 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 C1QTNF9P0C862 333 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 BTF3P20290 206 aaKnown RBP10.86□□□□□ -0.67
CCDC3-202ENST00000378839 OR4X1Q8NH49 305 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 ZNF714Q96N38 554 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 PCGF1Q9BSM1 259 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 SCO2A0A1W2PP80 73 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 DLX6P56179 175 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 TEPPQ6URK8 271 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 C11orf42Q8N5U0 333 aa10.86□□□□□ -0.67
CCDC3-202ENST00000378839 H1FXQ92522 213 aaKnown RBP10.86□□□□□ -0.67
CCDC3-202ENST00000378839 NKX6-3A6NJ46 265 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 K7ENP7 123 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 LOXP28300 417 aaPredicted RBP10.85□□□□□ -0.67
CCDC3-202ENST00000378839 CHRNB4P30926 498 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 CHRNA7P36544 502 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 GALR1P47211 349 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 PKIAP61925 76 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 HIST3H2BBQ8N257 126 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 DVL1O14640 695 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 CD33P20138 364 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 GRNP28799 593 aaKnown RBP10.85□□□□□ -0.67
CCDC3-202ENST00000378839 SSBP2P81877 361 aaPredicted RBP10.85□□□□□ -0.67
CCDC3-202ENST00000378839 MIR17HGQ75NE6 70 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 OR5AN1Q8NGI8 311 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 RAB9BQ9NP90 201 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 PRNDQ9UKY0 176 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 LYNX1G3V0Z9 82 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 LYNX1P0DP58 116 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 MEF2CQ06413 473 aaPredicted RBP10.85□□□□□ -0.67
CCDC3-202ENST00000378839 C10orf55Q5SWW7 151 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 ZNF503Q96F45 646 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 KCNIP2Q9NS61 270 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 SLC45A2Q9UMX9 530 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 ZNF257Q9Y2Q1 563 aa10.85□□□□□ -0.67
CCDC3-202ENST00000378839 H7BYZ3 331 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 ACTL6BO94805 426 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 RNASE2P10153 161 aaKnown RBP10.84□□□□□ -0.67
CCDC3-202ENST00000378839 RTL8BQ17RB0 113 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 MRGPRG-AS1Q2M3A8 158 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 ZNF664Q8N3J9 261 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 OR9G1Q8NH87 305 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 ST6GALNAC6Q969X2 333 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 TMEM68Q96MH6 324 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 PLEKHA3Q9HB20 300 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 IGLV2-23P01705 113 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 GCHFRP30047 84 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 RPL29P47914 159 aaKnown RBP10.84□□□□□ -0.67
CCDC3-202ENST00000378839 FAM3BP58499 235 aaPredicted RBP10.84□□□□□ -0.67
CCDC3-202ENST00000378839 CDSNQ15517 529 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 RUSC1-AS1Q66K80 236 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 OR10A7Q8NGE5 316 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 GAL3ST2Q9H3Q3 398 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 TPSG1Q9NRR2 321 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 BET1LQ9NYM9 111 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 PTPRQQ9UMZ3 2332 aa10.84□□□□□ -0.67
CCDC3-202ENST00000378839 SIAH2O43255 324 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 CXorf1O96002 111 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 HNF1AP20823 631 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 ENY2Q9NPA8 101 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 NDUFA4L2Q9NRX3 87 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 PDE6DO43924 150 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 HARBI1Q96MB7 349 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 NABP2Q9BQ15 211 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 SRD5A3Q9H8P0 318 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 MSRB2Q9Y3D2 182 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 MORN5Q5VZ52 161 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 OR4P4Q8NGL7 312 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 OR2T6Q8NHC8 308 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 LINC01560Q8TB33 94 aa10.83□□□□□ -0.68
CCDC3-202ENST00000378839 HIST1H2BLQ99880 126 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms