RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 IL6RP08887 468 aaPredicted RBP9.93□□□□□ -0.82
VPS13A-205ENST00000376636 HOXB1P14653 301 aaPredicted RBP9.93□□□□□ -0.82
VPS13A-205ENST00000376636 TEX45Q8NA69 505 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 GNB1LQ9BYB4 327 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 A0A1W2PRS3 328 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 MYF5P13349 255 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 NHSQ6T4R5 1651 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 SUMO4Q6EEV6 95 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 GATD1Q8NB37 220 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 KLF12Q9Y4X4 402 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 PAPPA2Q9BXP8 1791 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 EFNB1P98172 346 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 ZNF415Q09FC8 603 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 PKDREJQ9NTG1 2253 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 IGKV3D-20A0A0C4DH25 116 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 PRR33A8MZF0 331 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 SFTA2Q6UW10 78 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 MRAPQ8TCY5 172 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 TTTY12Q9BZ98 90 aa9.93□□□□□ -0.82
VPS13A-205ENST00000376636 GFRA3O60609 400 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 TRGV3P03979 118 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 CD28P10747 220 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 FAM214BQ7L5A3 538 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 FOXH1O75593 365 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 OCIAD2Q56VL3 154 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 MRPL52Q86TS9 123 aaKnown RBP9.92□□□□□ -0.82
VPS13A-205ENST00000376636 RCC1LQ96I51 464 aaKnown RBP9.92□□□□□ -0.82
VPS13A-205ENST00000376636 NPDC1Q9NQX5 325 aaPredicted RBP9.92□□□□□ -0.82
VPS13A-205ENST00000376636 F2Z2F3 143 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 NRN1Q9NPD7 142 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 TNRC6AQ8NDV7 1962 aaKnown RBP9.92□□□□□ -0.82
VPS13A-205ENST00000376636 SPINK2P20155 84 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 C3AR1Q16581 482 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 ABHD17AQ96GS6 310 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 TM4SF5O14894 197 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 CCL3P10147 92 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 AHRRA9YTQ3 701 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 LEPROTO15243 131 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 H2BFSP57053 126 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 SCARF2Q96GP6 870 aaPredicted RBP9.92□□□□□ -0.82
VPS13A-205ENST00000376636 COX14Q96I36 57 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 TMEM240Q5SV17 173 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.92□□□□□ -0.82
VPS13A-205ENST00000376636 RSPO3Q9BXY4 272 aaPredicted RBP9.92□□□□□ -0.82
VPS13A-205ENST00000376636 PPP1R3EQ9H7J1 279 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 TRPM7Q96QT4 1865 aa9.92□□□□□ -0.82
VPS13A-205ENST00000376636 C16orf47Q6ZP98 133 aaPredicted RBP9.91□□□□□ -0.82
VPS13A-205ENST00000376636 TPRX1Q8N7U7 411 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 ZNF124Q15973 351 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 SIRT4Q9Y6E7 314 aaPredicted RBP9.91□□□□□ -0.82
VPS13A-205ENST00000376636 NANOS3P60323 173 aaKnown RBP9.91□□□□□ -0.82
VPS13A-205ENST00000376636 CHODLQ9H9P2 273 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 CD7P09564 240 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 EML6Q6ZMW3 1958 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 LAGE3Q14657 143 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 GTSCR1Q86UQ5 136 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 CACNG8Q8WXS5 425 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 NPIPB3Q92617 1050 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 CNOT1A5YKK6 2376 aaKnown RBP9.91□□□□□ -0.82
VPS13A-205ENST00000376636 ZIC1Q15915 447 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 NGFRP08138 427 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 OR52E5Q8NH55 327 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 SERF1AO75920 110 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 OSR1Q8TAX0 266 aaPredicted RBP9.91□□□□□ -0.82
VPS13A-205ENST00000376636 CGAP01215 116 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 VN1R4Q7Z5H5 301 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 RTN4RL2Q86UN3 420 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 TMEM167AQ8TBQ9 72 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 Q9H3A6 140 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 PLSCR4Q9NRQ2 329 aa9.91□□□□□ -0.82
VPS13A-205ENST00000376636 NTN1O95631 604 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 PSG4Q00888 419 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 ZNHIT1O43257 154 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 ATP5L2Q7Z4Y8 100 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 C2orf82Q6UX34 121 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 WNT2BQ93097 391 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 DOCK4Q8N1I0 1966 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 PCNX1Q96RV3 2341 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 HS3ST3B1Q9Y662 390 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 RALGAPA2Q2PPJ7 1873 aa9.9□□□□□ -0.82
VPS13A-205ENST00000376636 TRBV5-5A0A0J9YX44 114 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 MAJINQ3KP22 176 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 STHQ8IWL8 128 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 IGKV1D-42A0A075B6H8 117 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 SCO2A0A1W2PP80 73 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 LINC00158P58513 81 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 JMJD8Q96S16 334 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 DLL3Q9NYJ7 618 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 RNF115Q9Y4L5 304 aa9.9□□□□□ -0.83
VPS13A-205ENST00000376636 PDLIM4P50479 330 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 ATP5J2P56134 94 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 DRAM1Q8N682 238 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 SLC50A1Q9BRV3 221 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 H3BMM0 161 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 C9orf40Q8IXQ3 194 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 ADARB2-AS1A8MUL3 147 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 H3BTX0 84 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 TMEM187Q14656 261 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 C1QL3Q5VWW1 255 aa9.89□□□□□ -0.83
VPS13A-205ENST00000376636 ITLN1Q8WWA0 313 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms