RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 GAGE12GP0CL81 117 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 GAGE12IP0CL82 117 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 RUNX1Q01196 453 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 LY6DQ14210 128 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 FBLN7Q53RD9 439 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 CXorf36Q9H7Y0 433 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 ERG28Q9UKR5 140 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 CCL26Q9Y258 94 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 N4BP2Q86UW6 1770 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 SNED1Q8TER0 1413 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 AKAP12Q02952 1782 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 GRIFINA4D1Z8 144 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF729A6NN14 1252 aaPredicted RBP3.96□□□□□ -1.77
SCN1A-202ENST00000375405 PSG4Q00888 419 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 ISOC2Q96AB3 205 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 IFT22Q9H7X7 185 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 LILRA5A6NI73 299 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 NXPH4O95158 308 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 MDKP21741 143 aaPredicted RBP3.96□□□□□ -1.77
SCN1A-202ENST00000375405 RPL36AP83881 106 aaKnown RBP3.96□□□□□ -1.77
SCN1A-202ENST00000375405 GCSAMQ8N6F7 178 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 RPL36ALQ969Q0 106 aaKnown RBP3.96□□□□□ -1.77
SCN1A-202ENST00000375405 SCARF2Q96GP6 870 aaPredicted RBP3.96□□□□□ -1.77
SCN1A-202ENST00000375405 RPP21Q9H633 154 aaKnown RBP3.96□□□□□ -1.77
SCN1A-202ENST00000375405 FBXL7Q9UJT9 491 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF257Q9Y2Q1 563 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 Q9Y3F1 56 aa3.96□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF142P52746 1687 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 IFT172Q9UG01 1749 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 SLIT3O75094 1523 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 MOSP00540 346 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 C2orf82Q6UX34 121 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 PPP1R27Q86WC6 154 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 DMRTC2Q8IXT2 367 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 C16orf52Q8NHV5 167 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 RASL10AQ92737 203 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 CALYQ9NYX4 217 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 PRR13Q9NZ81 148 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 VAX2Q9UIW0 290 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 LAMA4Q16363 1823 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 FER1L4A9Z1Z3 1794 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 GREB1Q4ZG55 1949 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 IGKV6D-41A0A0C4DH26 115 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 BCL2P10415 239 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 HLA-DRB3P79483 266 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM187Q14656 261 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 COX19Q49B96 90 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 C1orf220Q5T0J3 134 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 SP5Q6BEB4 398 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 NEGR1Q7Z3B1 354 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 NFAM1Q8NET5 270 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 FNDC4Q9H6D8 234 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 ZFP64Q9NPA5 681 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 C10orf71Q711Q0 1435 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 RGPD2P0DJD1 1756 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 GCM2O75603 506 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF345Q14585 488 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 CD300EQ496F6 205 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 SCD5Q86SK9 330 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 GATAD1Q8WUU5 269 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 SIGLEC11Q96RL6 698 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 SLC25A39Q9BZJ4 359 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 UBL5Q9BZL1 73 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 RGPD8O14715 1765 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 MALRD1Q5VYJ5 2156 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 MYO5AQ9Y4I1 1855 aaKnown RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 CUL9Q8IWT3 2517 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 RHODO00212 210 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 SIGLEC5O15389 551 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 SIGLEC14Q08ET2 396 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 VWC2Q2TAL6 325 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 ELSPBP1Q96BH3 223 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 COQ2Q96H96 371 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 PDLIM5Q96HC4 596 aaKnown RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 FAM110AQ9BQ89 295 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 LRP12Q9Y561 859 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 AGRNO00468 2067 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 SPATA31D1Q6ZQQ2 1576 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 TRDV1A0A1B0GX56 115 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 IGKV1D-12P01611 117 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 FAM166AQ6J272 317 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF703Q9H7S9 590 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-202ENST00000375405 PLSCR4Q9NRQ2 329 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 STARD10Q9Y365 291 aa3.96□□□□□ -1.78
SCN1A-202ENST00000375405 KIF13BQ9NQT8 1826 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 XRN1Q8IZH2 1706 aaKnown RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 MCM3APO60318 1980 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 NFAT5O94916 1531 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 A8MWV9 139 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 CDKN1AP38936 164 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 FBXW9Q5XUX1 488 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 CCL4L1Q8NHW4 92 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 RHOVQ96L33 236 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 PRR15LQ9BU68 103 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 UQCR10Q9UDW1 63 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 DSPPQ9NZW4 1301 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 C4AP0C0L4 1744 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 C4BP0C0L5 1744 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 MED1Q15648 1581 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms