RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RPEL1Q2QD12 228 aa9.96□□□□□ -0.81
CLIP3-201ENST00000360535 STARD4Q96DR4 205 aa9.96□□□□□ -0.81
CLIP3-201ENST00000360535 IL36BQ9NZH7 164 aa9.96□□□□□ -0.81
CLIP3-201ENST00000360535 KALRNO60229 2985 aa9.96□□□□□ -0.81
CLIP3-201ENST00000360535 TRAV5A0A0B4J249 113 aa9.96□□□□□ -0.82
CLIP3-201ENST00000360535 PLAUP00749 431 aa9.96□□□□□ -0.82
CLIP3-201ENST00000360535 NTF3P20783 257 aa9.96□□□□□ -0.82
CLIP3-201ENST00000360535 KLF3P57682 345 aaPredicted RBP9.96□□□□□ -0.82
CLIP3-201ENST00000360535 TPPP2P59282 170 aa9.96□□□□□ -0.82
CLIP3-201ENST00000360535 PRR27Q6MZM9 219 aa9.96□□□□□ -0.82
CLIP3-201ENST00000360535 ST6GALNAC3Q8NDV1 305 aa9.96□□□□□ -0.82
CLIP3-201ENST00000360535 TP53TG3Q9ULZ0 132 aa9.96□□□□□ -0.82
CLIP3-201ENST00000360535 RPH3ALQ9UNE2 315 aa9.96□□□□□ -0.82
CLIP3-201ENST00000360535 TRGV10A0A0A0MS01 117 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 PRR33A8MZF0 331 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 M0R143 59 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 CD99P14209 185 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 PCP4P48539 62 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 CCL8P80075 99 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 TRAT1Q6PIZ9 186 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 FAM90A1Q86YD7 464 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 DEFB124Q8NES8 71 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 ZCCHC14Q8WYQ9 949 aaKnown RBP9.95□□□□□ -0.82
CLIP3-201ENST00000360535 NEU1Q99519 415 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 ZNF71Q9NQZ8 489 aaPredicted RBP9.95□□□□□ -0.82
CLIP3-201ENST00000360535 IDI2-AS1Q9NZ38 188 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 PRSS46E5RG02 174 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 PRB4P10163 310 aaPredicted RBP9.95□□□□□ -0.82
CLIP3-201ENST00000360535 TMEM106BQ9NUM4 274 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 SH3BGRL2Q9UJC5 107 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 SRRM4A7MD48 611 aaKnown RBP9.95□□□□□ -0.82
CLIP3-201ENST00000360535 C17orf58Q2M2W7 97 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 OR5AU1Q8NGC0 362 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 BTF3L4Q96K17 158 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 SLC35D1Q9NTN3 355 aa9.95□□□□□ -0.82
CLIP3-201ENST00000360535 OTOGLQ3ZCN5 2332 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 ZFHX2Q9C0A1 2572 aaPredicted RBP9.94□□□□□ -0.82
CLIP3-201ENST00000360535 TNFSF13O75888 250 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 PRB3Q04118 309 aaPredicted RBP9.94□□□□□ -0.82
CLIP3-201ENST00000360535 TIGITQ495A1 244 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 FAM19A2Q8N3H0 131 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 OR2T6Q8NHC8 308 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 IGKV1OR2-108A0A075B7D4 117 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 TRAV34A0A0B4J273 112 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 ZNF891A8MT65 544 aaPredicted RBP9.94□□□□□ -0.82
CLIP3-201ENST00000360535 AMTP48728 403 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 SIGLECL1Q8N7X8 197 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 LSM4Q9Y4Z0 139 aaKnown RBP9.94□□□□□ -0.82
CLIP3-201ENST00000360535 ABCA4P78363 2273 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 TRAV17A0A0B4J275 112 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 M0R296 226 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 CHRNB4P30926 498 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 TNFAIP6P98066 277 aaPredicted RBP9.94□□□□□ -0.82
CLIP3-201ENST00000360535 MZT1Q08AG7 82 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 C1orf194Q5T5A4 169 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 ATOH7Q8N100 152 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 SPTA1P02549 2419 aa9.94□□□□□ -0.82
CLIP3-201ENST00000360535 KBTBD11-OT1A0A1B0GTJ5 212 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 MBNL2Q5VZF2 373 aaKnown RBP9.93□□□□□ -0.82
CLIP3-201ENST00000360535 VAMP8Q9BV40 100 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 GNB4Q9HAV0 340 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 MED13LQ71F56 2210 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 IGHV3-21A0A0B4J1V1 117 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 ZNF253O75346 499 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 REG1AP05451 166 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 RAB7AP51149 207 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 LINC00310P59036 64 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 FAM27E3Q08E93 113 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 C10orf55Q5SWW7 151 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 MORN5Q5VZ52 161 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 BEND2Q8NDZ0 799 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 OR52E5Q8NH55 327 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 DKK4Q9UBT3 224 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 RNF114Q9Y508 228 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 SLC25A15Q9Y619 301 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 APC2O95996 2303 aa9.93□□□□□ -0.82
CLIP3-201ENST00000360535 IGHG3P01860 377 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 LINC00869P0C866 280 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 PYYP10082 97 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 LGALS4P56470 323 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 LBHQ53QV2 105 aaPredicted RBP9.92□□□□□ -0.82
CLIP3-201ENST00000360535 C22orf34Q6ZV56 151 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 H1FXQ92522 213 aaKnown RBP9.92□□□□□ -0.82
CLIP3-201ENST00000360535 PLSCR4Q9NRQ2 329 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 IL19Q9UHD0 177 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 PPIAL4AQ9Y536 164 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 F2RL2O00254 374 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 CCL3L1P16619 93 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 SRIP30626 198 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 DDB2Q92466 427 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 SLC45A2Q9UMX9 530 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 DSCAML1Q8TD84 2053 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 IGLV1-44P01699 117 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 IRF2P14316 349 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 TFPI2P48307 235 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 YPEL3P61236 119 aaPredicted RBP9.92□□□□□ -0.82
CLIP3-201ENST00000360535 SSBP2P81877 361 aaPredicted RBP9.92□□□□□ -0.82
CLIP3-201ENST00000360535 ZNF474Q6S9Z5 364 aaPredicted RBP9.92□□□□□ -0.82
CLIP3-201ENST00000360535 RCHY1Q96PM5 261 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 WNT10AQ9GZT5 417 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms