RNA–Protein interactions for RNA: ENST00000360495.9

CCDC144A-203, Transcript of coiled-coil domain containing 144A, humanhuman

TSL 1 (best)

Gene CCDC144A, Length 5,545 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144A-203ENST00000360495 RSPO4Q2I0M5 234 aaPredicted RBP11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 SEMA5BQ9P283 1151 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 EREGO14944 169 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 IGKV3-20P01619 116 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 UMODP07911 640 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 IL9P15248 144 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 TMEM155Q4W5P6 130 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 MPV17L2Q567V2 206 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 DEFB124Q8NES8 71 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 TMEM54Q969K7 222 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 IFI27L1Q96BM0 104 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 TMEM101Q96IK0 257 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 EEF1AKMT3Q96AZ1 226 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 TIMP4Q99727 224 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 SRXN1Q9BYN0 137 aa11.31□□□□□ -0.6
CCDC144A-203ENST00000360495 IGFBP3P17936 291 aaPredicted RBP11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 SPTBP11277 2137 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 TRAV21A0A0B4J279 112 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 ZXDCQ2QGD7 858 aaPredicted RBP11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 CHODLQ9H9P2 273 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 IGHV1-45A0A0A0MS14 117 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 TRAV8-1A0A0A6YYK1 113 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 TMEM256Q8N2U0 113 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 OSR1Q8TAX0 266 aaPredicted RBP11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 TOMM7Q9P0U1 55 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 GAGE12BA1L429 117 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 KIR3DL3Q8N743 410 aa11.3□□□□□ -0.6
CCDC144A-203ENST00000360495 BCL6BQ8N143 479 aaPredicted RBP11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 VSIRQ9H7M9 311 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 NXT2Q9NPJ8 142 aaKnown RBP11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 SLC25A15Q9Y619 301 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 NDUFA2O43678 99 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 FOXL1Q12952 345 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 OCIAD2Q56VL3 154 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 SHISA5Q8N114 240 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 CACNG8Q8WXS5 425 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 OTORQ9NRC9 128 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 CYTL1Q9NRR1 136 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 PPIAL4CA0A0B4J2A2 164 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 IGHV3-66A0A0C4DH42 116 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 CD55P08174 381 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 PPIAL4GP0DN37 164 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 SSBP2P81877 361 aaPredicted RBP11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 FOXA2Q9Y261 457 aaPredicted RBP11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 CHTOPQ9Y3Y2 248 aaKnown RBP11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 A0A087X0K7 114 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 SMIM10L1P0DMW3 83 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 SRSF1Q07955 248 aaKnown RBP eCLIP11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 ACTL10Q5JWF8 245 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 ZNRF1Q8ND25 227 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 SMIM10Q96HG1 83 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 DEPPQ9NTK1 212 aa11.29□□□□□ -0.6
CCDC144A-203ENST00000360495 LY75O60449 1722 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 GREM1O60565 184 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 TIMP3P35625 211 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 SNRPD3P62318 126 aaKnown RBP11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 SPEM2Q0P670 501 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 ATXN8Q156A1 80 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 TMEM144Q7Z5S9 345 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 APOBEC4Q8WW27 367 aaKnown RBP11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 CLEC7AQ9BXN2 247 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 S4R3C0 116 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 SLX4Q8IY92 1834 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 IGHV3-49A0A0A0MS15 119 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 IGHV1-69-2A0A0G2JMI3 117 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 IGHV3-23P01764 117 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 TSPAN7P41732 249 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 TSKUQ8WUA8 353 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 ERG28Q9UKR5 140 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 IGKV1D-43A0A0B4J1Z2 117 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 A0A1B0GW64 132 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 hDV102S1A0JD36 115 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 TRIP6Q15654 476 aaKnown RBP11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 RNF182Q8N6D2 247 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 CITED1Q99966 193 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 CFHR5Q9BXR6 569 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 TMEM74BQ9NUR3 256 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 EPDR1Q9UM22 224 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 KIF13BQ9NQT8 1826 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 PLNP26678 52 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 DUX5Q96PT3 197 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 YAE1D1Q9NRH1 226 aa11.28□□□□□ -0.6
CCDC144A-203ENST00000360495 SPINK8P0C7L1 97 aa11.27□□□□□ -0.6
CCDC144A-203ENST00000360495 SAA1P0DJI8 122 aaPredicted RBP11.27□□□□□ -0.6
CCDC144A-203ENST00000360495 GUSBP1Q15486 140 aa11.27□□□□□ -0.6
CCDC144A-203ENST00000360495 FAM71F2Q6NXP2 309 aa11.27□□□□□ -0.6
CCDC144A-203ENST00000360495 SCARF2Q96GP6 870 aaPredicted RBP11.27□□□□□ -0.6
CCDC144A-203ENST00000360495 MIA3Q5JRA6 1907 aa11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 ID3Q02535 119 aa11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 LCN12Q6JVE5 192 aa11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 ATP5L2Q7Z4Y8 100 aa11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 IGKV1D-13A0A0B4J2D9 117 aa11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 IGKV1-13P0DP09 117 aa11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 C3orf79P0CE67 100 aa11.27□□□□□ -0.61
CCDC144A-203ENST00000360495 IFNL4K9M1U5 179 aa11.26□□□□□ -0.61
CCDC144A-203ENST00000360495 PPBPP02775 128 aa11.26□□□□□ -0.61
CCDC144A-203ENST00000360495 DMRTC2Q8IXT2 367 aaPredicted RBP11.26□□□□□ -0.61
CCDC144A-203ENST00000360495 OR13A1Q8NGR1 328 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms