RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 MED9Q9NWA0 146 aa5.56□□□□□ -1.52
VPS13A-201ENST00000355766 FKBP11Q9NYL4 201 aa5.56□□□□□ -1.52
VPS13A-201ENST00000355766 BET1LQ9NYM9 111 aa5.56□□□□□ -1.52
VPS13A-201ENST00000355766 OR5AC2Q9NZP5 309 aa5.56□□□□□ -1.52
VPS13A-201ENST00000355766 INSIG2Q9Y5U4 225 aa5.56□□□□□ -1.52
VPS13A-201ENST00000355766 SOX21Q9Y651 276 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-201ENST00000355766 IGHV3OR16-10A0A075B7F0 116 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 BORCS7-ASMTA0A0B4J1R7 106 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 IGHV2-26A0A0B4J1V2 119 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 TRAV40A0A0B4J280 105 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 INS-IGF2F8WCM5 200 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 SLC31A2O15432 143 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 SYNGR2O43760 224 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 RAMP3O60896 148 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 TSPAN9O75954 239 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 DFFBO76075 338 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 CCL3L1P16619 93 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 NFYBP25208 207 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 CEACAM3P40198 252 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 LGALS7P47929 136 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 SULT1A1P50225 295 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 BRWD1-AS2P59051 145 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 SPCS3P61009 180 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 RPL15P61313 204 aaKnown RBP5.55□□□□□ -1.52
VPS13A-201ENST00000355766 RPL30P62888 115 aaKnown RBP5.55□□□□□ -1.52
VPS13A-201ENST00000355766 HBG1P69891 147 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 HBG2P69892 147 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 RPP30P78346 268 aaKnown RBP5.55□□□□□ -1.52
VPS13A-201ENST00000355766 ZNF816Q0VGE8 651 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-201ENST00000355766 HABP2Q14520 560 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-201ENST00000355766 HLA-DRB5Q30154 266 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 MINOS1Q5TGZ0 78 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 RUSC1-AS1Q66K80 236 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 CCDC144NLQ6NUI1 221 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 C5orf24Q7Z6I8 188 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 BAP18Q8IXM2 172 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 ABHD12Q8N2K0 398 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 OR8H1Q8NGG4 311 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 OR5B3Q8NH48 314 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 LINC01006Q8NI28 216 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 R3HDM4Q96D70 268 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 ARV1Q9H2C2 271 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 PRNDQ9UKY0 176 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 RNF150Q9ULK6 438 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 FOXA2Q9Y261 457 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-201ENST00000355766 WASHC3Q9Y3C0 194 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 MINOS1-NBL1R4GNA1 71 aa5.55□□□□□ -1.52
VPS13A-201ENST00000355766 IGHV2-70DA0A0C4DH43 119 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 A0A0G2JRQ6 117 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 C15orf61A6NNL5 157 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 ODF3BA8MYP8 253 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 H0YJW9 148 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 SSSCA1O60232 199 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 FCGR3BO75015 233 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 MMP23AO75900 390 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 SCGB1D2O95969 90 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 KRASP01116 189 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 OPN1MWP04001 364 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 ARG1P05089 322 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 IL6RP08887 468 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-201ENST00000355766 CT45A6P0DMU7 189 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 CT45A5P0DMU8 189 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 CT45A7P0DMV0 189 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 OPN1MW2P0DN77 364 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 OPN1MW3P0DN78 364 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 RAB5CP51148 216 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 UBE2KP61086 200 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 EWSR1Q01844 656 aaKnown RBP eCLIP5.54□□□□□ -1.52
VPS13A-201ENST00000355766 PAX2Q02962 417 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 EXOSC2Q13868 293 aaKnown RBP5.54□□□□□ -1.52
VPS13A-201ENST00000355766 LTC4SQ16873 150 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 DEFB112Q30KQ8 113 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 RPL39P5Q59GN2 51 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 BTNL3Q6UXE8 466 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 TGIF2LXQ8IUE1 241 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 OR8H3Q8N146 312 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 TMEM86BQ8N661 226 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 TMEM252Q8N6L7 170 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 ZNF383Q8NA42 475 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 PINX1Q96BK5 328 aaKnown RBP5.54□□□□□ -1.52
VPS13A-201ENST00000355766 CLCC1Q96S66 551 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 TSNAXQ99598 290 aaKnown RBP5.54□□□□□ -1.52
VPS13A-201ENST00000355766 GGACTQ9BVM4 153 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 ZNF471Q9BX82 626 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-201ENST00000355766 HIPK2Q9H2X6 1198 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 ZC4H2Q9NQZ6 224 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 TNFRSF19Q9NS68 423 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 SLC35D1Q9NTN3 355 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 TMEM14BQ9NUH8 114 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 TMEM140Q9NV12 185 aa5.54□□□□□ -1.52
VPS13A-201ENST00000355766 TBL2Q9Y4P3 447 aaKnown RBP5.54□□□□□ -1.52
VPS13A-201ENST00000355766 LSM5Q9Y4Y9 91 aaKnown RBP5.54□□□□□ -1.52
VPS13A-201ENST00000355766 RPS10-NUDT3A0A1W2PQS6 291 aa5.53□□□□□ -1.52
VPS13A-201ENST00000355766 LINC00862A6NCI5 91 aa5.53□□□□□ -1.52
VPS13A-201ENST00000355766 MSGN1A6NI15 193 aa5.53□□□□□ -1.52
VPS13A-201ENST00000355766 LEUTXA8MZ59 168 aa5.53□□□□□ -1.52
VPS13A-201ENST00000355766 UMAD1C9J7I0 102 aa5.53□□□□□ -1.52
VPS13A-201ENST00000355766 FNDC10F2Z333 226 aa5.53□□□□□ -1.52
VPS13A-201ENST00000355766 LY6LH3BQJ8 138 aa5.53□□□□□ -1.52
VPS13A-201ENST00000355766 BUB1B-PAK6H3BSN5 160 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms