RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 DEFA4P12838 97 aa17.21■□□□□ 0.35
SHMT1-203ENST00000354098 CDX1P47902 265 aaPredicted RBP17.21■□□□□ 0.35
SHMT1-203ENST00000354098 PDLIM3Q53GG5 364 aaPredicted RBP17.21■□□□□ 0.35
SHMT1-203ENST00000354098 C11orf87Q6NUJ2 197 aa17.21■□□□□ 0.35
SHMT1-203ENST00000354098 OR2C3Q8N628 320 aa17.21■□□□□ 0.35
SHMT1-203ENST00000354098 OR5B12Q96R08 314 aa17.21■□□□□ 0.35
SHMT1-203ENST00000354098 GNB4Q9HAV0 340 aa17.21■□□□□ 0.35
SHMT1-203ENST00000354098 HSPB7Q9UBY9 170 aa17.21■□□□□ 0.35
SHMT1-203ENST00000354098 DNHD1Q96M86 4753 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 TRBV9A0A0B4J1U6 114 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 SNRPGP15A8MWD9 76 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 OR2J3O76001 311 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 HOXA1P49639 335 aaPredicted RBP17.2■□□□□ 0.34
SHMT1-203ENST00000354098 MFAP2P55001 183 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 TNFRSF9Q07011 255 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 C2orf68Q2NKX9 166 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 KLHL30-AS1Q8NEE0 82 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 UBE2E2Q96LR5 201 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 IGHV3-11P01762 117 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 RHOGP84095 191 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 TATDN3Q17R31 274 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 P2RX4Q99571 388 aa17.2■□□□□ 0.34
SHMT1-203ENST00000354098 C13orf42A0A1B0GVH6 325 aa17.19■□□□□ 0.34
SHMT1-203ENST00000354098 CEBPZOSA8MTT3 80 aa17.19■□□□□ 0.34
SHMT1-203ENST00000354098 NUDT19A8MXV4 375 aa17.19■□□□□ 0.34
SHMT1-203ENST00000354098 ERHP84090 104 aaKnown RBP17.19■□□□□ 0.34
SHMT1-203ENST00000354098 OXA1LQ15070 435 aa17.19■□□□□ 0.34
SHMT1-203ENST00000354098 C8orf86Q6ZUL3 223 aa17.19■□□□□ 0.34
SHMT1-203ENST00000354098 RBKSQ9H477 322 aa17.19■□□□□ 0.34
SHMT1-203ENST00000354098 F11RQ9Y624 299 aaKnown RBP17.19■□□□□ 0.34
SHMT1-203ENST00000354098 IGLV11-55A0A075B6I3 123 aa17.18■□□□□ 0.34
SHMT1-203ENST00000354098 INS-IGF2F8WCM5 200 aa17.18■□□□□ 0.34
SHMT1-203ENST00000354098 IAH1Q2TAA2 248 aaPredicted RBP17.18■□□□□ 0.34
SHMT1-203ENST00000354098 ENY2Q9NPA8 101 aa17.18■□□□□ 0.34
SHMT1-203ENST00000354098 FBXL7Q9UJT9 491 aa17.18■□□□□ 0.34
SHMT1-203ENST00000354098 FAM25EA8MYX2 175 aa17.17■□□□□ 0.34
SHMT1-203ENST00000354098 NDUFB8O95169 186 aa17.17■□□□□ 0.34
SHMT1-203ENST00000354098 KLK9Q2XQG4 91 aa17.17■□□□□ 0.34
SHMT1-203ENST00000354098 DEFB136Q30KP8 78 aa17.17■□□□□ 0.34
SHMT1-203ENST00000354098 SLC25A24Q6NUK1 477 aa17.17■□□□□ 0.34
SHMT1-203ENST00000354098 MRPL41Q8IXM3 137 aaKnown RBP17.17■□□□□ 0.34
SHMT1-203ENST00000354098 KLK9Q9UKQ9 250 aa17.17■□□□□ 0.34
SHMT1-203ENST00000354098 C7orf66A4D0T2 115 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 TSPAN15O95858 294 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 NECAP1Q8NC96 275 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 OR4D5Q8NGN0 318 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 C4orf3Q8WVX3 66 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 DUX3Q96PT4 197 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 MAGT1Q9H0U3 335 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 HEYLQ9NQ87 328 aaPredicted RBP17.16■□□□□ 0.34
SHMT1-203ENST00000354098 GSKIPQ9P0R6 139 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 CACFD1Q9UGQ2 172 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 ALG5Q9Y673 324 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 I3L521 148 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 C15orf32Q32M92 178 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 ZBTB8BQ8NAP8 495 aaPredicted RBP17.16■□□□□ 0.34
SHMT1-203ENST00000354098 ZNF114Q8NC26 417 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 OR1P1Q8NH06 330 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 DTD1Q8TEA8 209 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 S4R3C0 116 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 TRRAPQ9Y4A5 3859 aa17.16■□□□□ 0.34
SHMT1-203ENST00000354098 A0A0G2JLM5 398 aa17.15■□□□□ 0.34
SHMT1-203ENST00000354098 C5orf51A6NDU8 294 aa17.15■□□□□ 0.34
SHMT1-203ENST00000354098 FAM223BA6NKX1 122 aa17.15■□□□□ 0.34
SHMT1-203ENST00000354098 M0QZ24 198 aa17.15■□□□□ 0.34
SHMT1-203ENST00000354098 HIST1H1BP16401 226 aaKnown RBP17.15■□□□□ 0.34
SHMT1-203ENST00000354098 SNCAP37840 140 aa17.15■□□□□ 0.34
SHMT1-203ENST00000354098 ATP5G2Q06055 141 aa17.15■□□□□ 0.34
SHMT1-203ENST00000354098 FAM223AQ8IWN6 122 aa17.15■□□□□ 0.34
SHMT1-203ENST00000354098 USMG5Q96IX5 58 aa17.15■□□□□ 0.34
SHMT1-203ENST00000354098 FAM90A26D6RGX4 464 aa17.14■□□□□ 0.33
SHMT1-203ENST00000354098 RNASE2P10153 161 aaKnown RBP17.14■□□□□ 0.33
SHMT1-203ENST00000354098 ID3Q02535 119 aa17.14■□□□□ 0.33
SHMT1-203ENST00000354098 GOSR2O14653 212 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 SSNA1O43805 119 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 SIX6O95475 246 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 IGHV3-23P01764 117 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 LGALS1P09382 135 aaKnown RBP17.13■□□□□ 0.33
SHMT1-203ENST00000354098 BSXQ3C1V8 233 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 RAX2Q96IS3 184 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 HIPK2Q9H2X6 1198 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 VWFP04275 2813 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 IGHV3-21A0A0B4J1V1 117 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 MFSD2BA6NFX1 497 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 SYNGR2O43760 224 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 IAPPP10997 89 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 NKX2-1P43699 371 aaPredicted RBP17.13■□□□□ 0.33
SHMT1-203ENST00000354098 POLR2GP62487 172 aaKnown RBP eCLIP17.13■□□□□ 0.33
SHMT1-203ENST00000354098 GSG1LQ6UXU4 331 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 ETV3LQ6ZN32 361 aa17.13■□□□□ 0.33
SHMT1-203ENST00000354098 ANKRD34BA5PLL1 514 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 SCGB1D2O95969 90 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 RUNX1Q01196 453 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 EXOSC2Q13868 293 aaKnown RBP17.12■□□□□ 0.33
SHMT1-203ENST00000354098 ZNF343Q6P1L6 599 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 OR4F17Q8NGA8 305 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 OR1L6Q8NGR2 347 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 TMEM170AQ8WVE7 144 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 MISP3Q96FF7 219 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 C2orf50Q96LR7 162 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms