RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SRSF12Q8WXF0 261 aaKnown RBP12.38□□□□□ -0.43
COL17A1-201ENST00000353479 GGACTQ9BVM4 153 aa12.38□□□□□ -0.43
COL17A1-201ENST00000353479 PHF3Q92576 2039 aaKnown RBP12.38□□□□□ -0.43
COL17A1-201ENST00000353479 AP4M1O00189 453 aa12.38□□□□□ -0.43
COL17A1-201ENST00000353479 CX3CL1P78423 397 aa12.38□□□□□ -0.43
COL17A1-201ENST00000353479 HIST1H1AQ02539 215 aaPredicted RBP12.38□□□□□ -0.43
COL17A1-201ENST00000353479 ADIPOQQ15848 244 aa12.38□□□□□ -0.43
COL17A1-201ENST00000353479 DMRTA2Q96SC8 542 aa12.38□□□□□ -0.43
COL17A1-201ENST00000353479 LOC389332A0A1B0GUA5 103 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 MAS1LP35410 378 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 FAM3BP58499 235 aaPredicted RBP12.37□□□□□ -0.43
COL17A1-201ENST00000353479 WDR25Q64LD2 544 aaPredicted RBP12.37□□□□□ -0.43
COL17A1-201ENST00000353479 A0A0B4J293 547 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 RPUSD1Q9UJJ7 312 aaKnown RBP12.37□□□□□ -0.43
COL17A1-201ENST00000353479 C15orf61A6NNL5 157 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 GATA2P23769 480 aaPredicted RBP12.37□□□□□ -0.43
COL17A1-201ENST00000353479 ZNF407Q9C0G0 2248 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 HEATR1Q9H583 2144 aaKnown RBP12.37□□□□□ -0.43
COL17A1-201ENST00000353479 IGHV2-26A0A0B4J1V2 119 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 NAT1P18440 290 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 Q1RN00 199 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 VMO1Q7Z5L0 202 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 FER1L5A0AVI2 2057 aa12.37□□□□□ -0.43
COL17A1-201ENST00000353479 KLRD1Q13241 179 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 RCC1LQ96I51 464 aaKnown RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 MLNRO43193 412 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 ICAM4Q14773 271 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 TMEM42Q69YG0 159 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 RNASEH2CQ8TDP1 164 aaKnown RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 FOXI3A8MTJ6 420 aaPredicted RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 NHLRC3Q5JS37 347 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 EIF4E3Q8N5X7 224 aaKnown RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 SYT8Q8NBV8 401 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 OTX1P32242 354 aaPredicted RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 PGLYRP4Q96LB8 373 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 ELOVL1Q9BW60 279 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 SPTAN1Q13813 2472 aaKnown RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 ETV2O00321 342 aaPredicted RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 IGHV1-8P0DP01 117 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 VDAC2P45880 294 aaPredicted RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 HNRNPA3P51991 378 aaKnown RBP12.36□□□□□ -0.43
COL17A1-201ENST00000353479 Q6ZN92 141 aa12.36□□□□□ -0.43
COL17A1-201ENST00000353479 E7EQL1 145 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 ANOS1P23352 680 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 COL8A2P25067 703 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 PRSS22Q9GZN4 317 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 ZNF524Q96C55 264 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 PHLDA3Q9Y5J5 127 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 ERVH48-1M5A8F1 160 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 C19orf35Q6ZS72 473 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 OR9G9P0C7N8 305 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 HEPN1Q6WQI6 88 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 CACNG8Q8WXS5 425 aa12.35□□□□□ -0.43
COL17A1-201ENST00000353479 M0QZK8 103 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 NBEAP1P0C6P0 100 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 ELOBQ15370 118 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 CLDND2Q8NHS1 167 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 PARLQ9H300 379 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 LDLRAD4O15165 306 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 CGAP01215 116 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 TSPOP30536 169 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 TMEM97Q5BJF2 176 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 TNFRSF14Q92956 283 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.34□□□□□ -0.43
COL17A1-201ENST00000353479 ZNF343Q6P1L6 599 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 C5orf24Q7Z6I8 188 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 OR8A1Q8NGG7 326 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 GAFA1Q96PS6 74 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 TRAV14DV4A0A0A6YYC5 116 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 RBFOX2O43251 390 aaKnown RBP eCLIP12.34□□□□□ -0.43
COL17A1-201ENST00000353479 G0S2P27469 103 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 PUSL1Q8N0Z8 303 aaKnown RBP12.34□□□□□ -0.43
COL17A1-201ENST00000353479 FAM169BQ8N8A8 192 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 MAP1LC3CQ9BXW4 147 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 ZNF525Q8N782 197 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 TEX45Q8NA69 505 aa12.34□□□□□ -0.43
COL17A1-201ENST00000353479 SSC4DQ8WTU2 575 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 LINC00527Q9UJ94 153 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 TP53BP1Q12888 1972 aaPredicted RBP12.33□□□□□ -0.44
COL17A1-201ENST00000353479 IFITM2Q01629 132 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 ZNF581Q9P0T4 197 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 TRAV34A0A0B4J273 112 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 CD69Q07108 199 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 TMEM183BQ1AE95 376 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 ZNF841Q6ZN19 808 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 RNF222A6NCQ9 220 aa12.33□□□□□ -0.44
COL17A1-201ENST00000353479 IGKV1D-17A0A075B6S4 117 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 RPL29P47914 159 aaKnown RBP12.32□□□□□ -0.44
COL17A1-201ENST00000353479 MYOZ3Q8TDC0 251 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 RSPO3Q9BXY4 272 aaPredicted RBP12.32□□□□□ -0.44
COL17A1-201ENST00000353479 KIF26AQ9ULI4 1882 aaPredicted RBP12.32□□□□□ -0.44
COL17A1-201ENST00000353479 SRSF7Q16629 238 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL17A1-201ENST00000353479 LYPD2Q6UXB3 125 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 TMEM191AQ9H0A3 160 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 TNFSF13O75888 250 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 CD55P08174 381 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 SP5Q6BEB4 398 aaPredicted RBP12.32□□□□□ -0.44
COL17A1-201ENST00000353479 OR52E5Q8NH55 327 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 PKDREJQ9NTG1 2253 aa12.32□□□□□ -0.44
COL17A1-201ENST00000353479 B4DSR2 109 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms