RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 UBALD1Q8TB05 177 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 MRGPRDQ8TDS7 321 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 OBP2BQ9NPH6 170 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 TRAV9-2A0A087WT02 112 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 IGHV2OR16-5A0A0B4J2B6 119 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 IGHV2-70DA0A0C4DH43 119 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 IZUMO1RA6ND01 250 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 OR9G9P0C7N8 305 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 LINC00869P0C866 280 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 TNFSF4P23510 183 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 TBR1Q16650 682 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 TBC1D28Q2M2D7 210 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 CENPWQ5EE01 88 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 WDR86Q86TI4 376 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 TSKUQ8WUA8 353 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 ABHD17AQ96GS6 310 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 RNF114Q9Y508 228 aa13.08□□□□□ -0.32
HMGA1-202ENST00000347617 TRAV30A0A087WSZ9 112 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-202ENST00000347617 K7EM74 188 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 BMPR1BO00238 502 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 CGAP01215 116 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 APCSP02743 223 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 SRIP30626 198 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 DUTP33316 252 aaKnown RBP13.07□□□□□ -0.32
HMGA1-202ENST00000347617 MDP1Q86V88 176 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 CHRDL1Q9BU40 450 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 ZNF331Q9NQX6 463 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-202ENST00000347617 TUBG2Q9NRH3 451 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 LINC00473A8K010 186 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 SPINT2O43291 252 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 KLF5Q13887 457 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-202ENST00000347617 STPG3Q8N7X2 389 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 FAM169BQ8N8A8 192 aa13.07□□□□□ -0.32
HMGA1-202ENST00000347617 RNASE8Q8TDE3 154 aaKnown RBP13.07□□□□□ -0.32
HMGA1-202ENST00000347617 ALKBH7Q9BT30 221 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-202ENST00000347617 TECRQ9NZ01 308 aaKnown RBP13.07□□□□□ -0.32
HMGA1-202ENST00000347617 IQCF6A8MYZ5 107 aa13.06□□□□□ -0.32
HMGA1-202ENST00000347617 ATP5IP56385 69 aaPredicted RBP13.06□□□□□ -0.32
HMGA1-202ENST00000347617 SPINK9Q5DT21 86 aa13.06□□□□□ -0.32
HMGA1-202ENST00000347617 C1orf185Q5T7R7 199 aa13.06□□□□□ -0.32
HMGA1-202ENST00000347617 PQLC2Q6ZP29 291 aa13.06□□□□□ -0.32
HMGA1-202ENST00000347617 CNEP1R1Q8N9A8 125 aa13.06□□□□□ -0.32
HMGA1-202ENST00000347617 C1RLQ9NZP8 487 aa13.06□□□□□ -0.32
HMGA1-202ENST00000347617 PROCRQ9UNN8 238 aa13.06□□□□□ -0.32
HMGA1-202ENST00000347617 DOCK7Q96N67 2140 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 USF3Q68DE3 2245 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 IGLC7A0M8Q6 106 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 PPBPP02775 128 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 GPR12P47775 334 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 TAS2R45P59539 299 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 PRR20EP86478 221 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 PRR20CP86479 221 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 PRR20DP86480 221 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 PRR20BP86481 221 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 PRR20AP86496 221 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 FBLN7Q53RD9 439 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 SEM1Q6ZVN7 128 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 MUC15Q8N387 334 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 FAM57AQ8TBR7 257 aa13.05□□□□□ -0.32
HMGA1-202ENST00000347617 A0A1W2PRE2 83 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 VWA1Q6PCB0 445 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 OR4C5Q8NGB2 326 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 RCHY1Q96PM5 261 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 SAP30LQ9HAJ7 183 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 ZNF71Q9NQZ8 489 aaPredicted RBP13.04□□□□□ -0.32
HMGA1-202ENST00000347617 HCFC1P51610 2035 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 PSPNO60542 156 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 IGKV3-15P01624 115 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 USF1P22415 310 aaPredicted RBP13.04□□□□□ -0.32
HMGA1-202ENST00000347617 CEACAM8P31997 349 aaPredicted RBP13.04□□□□□ -0.32
HMGA1-202ENST00000347617 PPOXP50336 477 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 RELBQ01201 579 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 FOXF2Q12947 444 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 IBA57Q5T440 356 aaKnown RBP13.04□□□□□ -0.32
HMGA1-202ENST00000347617 FAM231DQ6ZW35 169 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 OR8B3Q8NGG8 313 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 COQ2Q96H96 371 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 OR8B2Q96RD0 313 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 PSG11Q9UQ72 335 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 TCF19Q9Y242 345 aa13.04□□□□□ -0.32
HMGA1-202ENST00000347617 NPY1RP25929 384 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 HOXC12P31275 282 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 GABRA2P47869 451 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 HINT1P49773 126 aaPredicted RBP13.03□□□□□ -0.32
HMGA1-202ENST00000347617 LRRC10Q5BKY1 277 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 SMIM15Q7Z3B0 74 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 C18orf32Q8TCD1 76 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 OR2V2Q96R30 315 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 SEPSECSQ9HD40 501 aaKnown RBP13.03□□□□□ -0.32
HMGA1-202ENST00000347617 ENY2Q9NPA8 101 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 JPT1Q9UK76 154 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 FAM215AQ9Y5M1 114 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 AKAP13Q12802 2813 aa13.03□□□□□ -0.32
HMGA1-202ENST00000347617 H0YJW9 148 aa13.02□□□□□ -0.32
HMGA1-202ENST00000347617 SMPD2O60906 423 aa13.02□□□□□ -0.32
HMGA1-202ENST00000347617 FCGR3BO75015 233 aa13.02□□□□□ -0.32
HMGA1-202ENST00000347617 HSBP1O75506 76 aa13.02□□□□□ -0.32
HMGA1-202ENST00000347617 LYZL6O75951 148 aa13.02□□□□□ -0.32
HMGA1-202ENST00000347617 REG1BP48304 166 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms