RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 C22orf39Q6P5X5 142 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 SFTPA2Q8IWL1 248 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 SFTPA1Q8IWL2 248 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 FAM240AA0A1B0GVK7 77 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 NDUFC2-KCTD14E9PQ53 114 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 F2Z2F3 143 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 LMX1BO60663 402 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 TUSC2O75896 110 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 EFNB3Q15768 340 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 C3AR1Q16581 482 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 PDPNQ86YL7 162 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 C8orf31Q8N9H6 132 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF747Q9BV97 191 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 FAM90A27PA6NNH2 459 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 HBDP02042 147 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 CRYGDP07320 174 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 PRDX1Q06830 199 aaKnown RBP3.44□□□□□ -1.86
NEDD4-201ENST00000338963 C12orf74Q32Q52 190 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 PPP1R32Q7Z5V6 425 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 BCORP1Q8N888 145 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 IL1F10Q8WWZ1 152 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 TIMM13Q9Y5L4 95 aaPredicted RBP3.44□□□□□ -1.86
NEDD4-201ENST00000338963 CXCL10P02778 98 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 AMN1Q8IY45 258 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 GAPTQ8N292 157 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 C1orf147Q96MC9 270 aaPredicted RBP3.44□□□□□ -1.86
NEDD4-201ENST00000338963 MYH3P11055 1940 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 TINCRA0A1B0GVN0 87 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 MARCH3Q86UD3 253 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 TMEM158Q8WZ71 300 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 PRNDQ9UKY0 176 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 MANSC4A6NHS7 340 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 H3BSH0 61 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 PGLYRP1O75594 196 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 NPYP01303 97 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 HERVK_113P63121 156 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF718Q3SXZ3 478 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 GOLT1AQ6ZVE7 132 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 SH2D6Q7Z4S9 175 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 IFI27L1Q96BM0 104 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 FLYWCH2Q96CP2 140 aaKnown RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 AMELYQ99218 206 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 HIST1H4GQ99525 98 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 KIR2DL4Q99706 377 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 IDI2-AS1Q9NZ38 188 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 CHCHD2Q9Y6H1 151 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 PRR19A6NJB7 356 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 FGF6P10767 208 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 RPL7P18124 248 aaKnown RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 OR1C1Q15619 314 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 TMEM170BQ5T4T1 132 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 DUX4L9Q6RFH8 374 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 FAM19A5Q7Z5A7 132 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 GOLGA2P5Q9HBQ8 144 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 FZR1Q9UM11 496 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 PLGLB1Q02325 96 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 ST8SIA1Q92185 356 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 RND1Q92730 232 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 A0A0A6YYD4 124 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 C15orf62A8K5M9 175 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 ATOX1O00244 68 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 ZG16O60844 167 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 NHLRC4P0CG21 123 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 PPP1CAP62136 330 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 LY6KQ17RY6 165 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 C6orf226Q5I0X4 101 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 DTX2Q86UW9 622 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 SMIM14Q96QK8 99 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 LINC01587Q99440 93 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 NAA38Q9BRA0 125 aaKnown RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 PRRG4Q9BZD6 226 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 TANC1Q9C0D5 1861 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 SCO2A0A1W2PP80 73 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 NPIPB11E5RHQ5 1161 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 TIMM8AO60220 97 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 GNG5P63218 68 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 ACP7Q6ZNF0 438 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 SLC25A48Q6ZT89 311 aaKnown RBP3.43□□□□□ -1.86
NEDD4-201ENST00000338963 PRO0461Q9UI25 63 aa3.43□□□□□ -1.86
NEDD4-201ENST00000338963 MYMXA0A1B0GTQ4 84 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 LTN1O94822 1766 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 P04436 131 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 CXCL5P42830 114 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 SHISA5Q8N114 240 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 SPTSSAQ969W0 71 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 TRBV7-7A0A0K0K1E9 115 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 H3BP45 60 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 CECR9P0C854 216 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 NPPCP23582 126 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 CTGFP29279 349 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 CLDN2P57739 230 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 OR1L8Q8NGR8 309 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 PLEKHB2Q96CS7 222 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 RPP21Q9H633 154 aaKnown RBP3.42□□□□□ -1.86
NEDD4-201ENST00000338963 LHFPL6Q9Y693 200 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 A0A087WV48 116 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 P01737 135 aa3.42□□□□□ -1.86
NEDD4-201ENST00000338963 CIARTQ8N365 385 aaPredicted RBP3.42□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF501Q96CX3 271 aaPredicted RBP3.42□□□□□ -1.86
NEDD4-201ENST00000338963 IL23AQ9NPF7 189 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms